miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10368 3' -59.5 NC_002687.1 + 283183 0.66 0.94888
Target:  5'- aGCGGCagcaacaGGGGCGGCagcaccaGGcGCGGCGGGg -3'
miRNA:   3'- -CGCUGc------CCUCGCUGc------CCuCGCUGUCC- -5'
10368 3' -59.5 NC_002687.1 + 102732 0.66 0.94888
Target:  5'- aGCGAC---AGCGACGGcGAcaGCGACGGc -3'
miRNA:   3'- -CGCUGcccUCGCUGCC-CU--CGCUGUCc -5'
10368 3' -59.5 NC_002687.1 + 270412 0.66 0.94888
Target:  5'- -gGGCGGG-GCuGCGGaGGGgGACAaGGa -3'
miRNA:   3'- cgCUGCCCuCGcUGCC-CUCgCUGU-CC- -5'
10368 3' -59.5 NC_002687.1 + 41233 0.66 0.94888
Target:  5'- cGC-ACGGaaAGUGGCGGGAGCgGGUAGGc -3'
miRNA:   3'- -CGcUGCCc-UCGCUGCCCUCG-CUGUCC- -5'
10368 3' -59.5 NC_002687.1 + 281945 0.66 0.944935
Target:  5'- cGCGGCaGGAGC-AgGGGcGGUGcCGGGg -3'
miRNA:   3'- -CGCUGcCCUCGcUgCCC-UCGCuGUCC- -5'
10368 3' -59.5 NC_002687.1 + 25557 0.66 0.944935
Target:  5'- cGUGugGGGGcagacaauGUGugGGGAGUGGacgcaauGGa -3'
miRNA:   3'- -CGCugCCCU--------CGCugCCCUCGCUgu-----CC- -5'
10368 3' -59.5 NC_002687.1 + 39185 0.66 0.943302
Target:  5'- aUGAgGGGAGCgGACGucgauugucaaauGGGCGACAGa -3'
miRNA:   3'- cGCUgCCCUCG-CUGCc------------CUCGCUGUCc -5'
10368 3' -59.5 NC_002687.1 + 77447 0.66 0.931928
Target:  5'- aGCGACGuccGuCGACGGGAGCGucgugccaGCAuGGg -3'
miRNA:   3'- -CGCUGCccuC-GCUGCCCUCGC--------UGU-CC- -5'
10368 3' -59.5 NC_002687.1 + 214988 0.66 0.927198
Target:  5'- cCGGCGGGGcCGAgGGcGGCGACAu- -3'
miRNA:   3'- cGCUGCCCUcGCUgCCcUCGCUGUcc -5'
10368 3' -59.5 NC_002687.1 + 71680 0.66 0.927198
Target:  5'- -aGGcCGGGGGCGuCGGGAaggucgGCGAUguuuGGGu -3'
miRNA:   3'- cgCU-GCCCUCGCuGCCCU------CGCUG----UCC- -5'
10368 3' -59.5 NC_002687.1 + 310721 0.66 0.927198
Target:  5'- uGCGACaaGAGCGGaGGGGGgGGgGGGu -3'
miRNA:   3'- -CGCUGccCUCGCUgCCCUCgCUgUCC- -5'
10368 3' -59.5 NC_002687.1 + 224177 0.67 0.922269
Target:  5'- gGUGGCGGGGGCagugcugguGGCGGuGgcGGUGGCGGu -3'
miRNA:   3'- -CGCUGCCCUCG---------CUGCC-C--UCGCUGUCc -5'
10368 3' -59.5 NC_002687.1 + 184083 0.67 0.922269
Target:  5'- gGCGGCGGuAGgucaCGACGGGGucGCGugGGu -3'
miRNA:   3'- -CGCUGCCcUC----GCUGCCCU--CGCugUCc -5'
10368 3' -59.5 NC_002687.1 + 224219 0.67 0.91182
Target:  5'- gGUGGCGGuGGCGAUGGcGAugGCGAUGGc -3'
miRNA:   3'- -CGCUGCCcUCGCUGCC-CU--CGCUGUCc -5'
10368 3' -59.5 NC_002687.1 + 316009 0.67 0.906301
Target:  5'- gGgGACGGuGGgGACGGuGGUGACAGc -3'
miRNA:   3'- -CgCUGCCcUCgCUGCCcUCGCUGUCc -5'
10368 3' -59.5 NC_002687.1 + 323728 0.67 0.906301
Target:  5'- uGUGAuCGGGGaggguuguGUGAgGGGAgggGUGACGGGg -3'
miRNA:   3'- -CGCU-GCCCU--------CGCUgCCCU---CGCUGUCC- -5'
10368 3' -59.5 NC_002687.1 + 225495 0.67 0.905738
Target:  5'- cGCGGCGGcGGCGGCGGaacguaagaggaaGGGUGccucaACGGGu -3'
miRNA:   3'- -CGCUGCCcUCGCUGCC-------------CUCGC-----UGUCC- -5'
10368 3' -59.5 NC_002687.1 + 308870 0.67 0.900587
Target:  5'- gGUGGUGGGGGCGucaGCGGGGGCucccugcucGGcCGGGg -3'
miRNA:   3'- -CGCUGCCCUCGC---UGCCCUCG---------CU-GUCC- -5'
10368 3' -59.5 NC_002687.1 + 10323 0.67 0.900587
Target:  5'- gGCGGCGGcaguGGCGGCGGcaguuGUGGCAGu -3'
miRNA:   3'- -CGCUGCCc---UCGCUGCCcu---CGCUGUCc -5'
10368 3' -59.5 NC_002687.1 + 291477 0.67 0.894681
Target:  5'- uUGACGGGuGgGuCGGGGG-GAgAGGg -3'
miRNA:   3'- cGCUGCCCuCgCuGCCCUCgCUgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.