miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10368 5' -58.2 NC_002687.1 + 223902 0.66 0.937652
Target:  5'- aCugCUGCuGUUGCuguCGCUGCCAUc- -3'
miRNA:   3'- -GugGACGuCGACGug-GUGACGGUGcu -5'
10368 5' -58.2 NC_002687.1 + 51757 0.66 0.937652
Target:  5'- -gUCUaaGGCUGCACCAcCUGCUACu- -3'
miRNA:   3'- guGGAcgUCGACGUGGU-GACGGUGcu -5'
10368 5' -58.2 NC_002687.1 + 50772 0.66 0.937652
Target:  5'- -gUCUaaGGCUGCACCAcCUGCUACu- -3'
miRNA:   3'- guGGAcgUCGACGUGGU-GACGGUGcu -5'
10368 5' -58.2 NC_002687.1 + 310937 0.66 0.935804
Target:  5'- gCGgUUGCGGC-GCGCCACgcacggcgaaaugGCCGCGu -3'
miRNA:   3'- -GUgGACGUCGaCGUGGUGa------------CGGUGCu -5'
10368 5' -58.2 NC_002687.1 + 304198 0.66 0.932968
Target:  5'- gGCCcGCuGCUGuCAUCGgUgGCCGCGAu -3'
miRNA:   3'- gUGGaCGuCGAC-GUGGUgA-CGGUGCU- -5'
10368 5' -58.2 NC_002687.1 + 315700 0.66 0.932488
Target:  5'- cCACC-GcCAGCcGCACCgaauccuGCcGCCACGAg -3'
miRNA:   3'- -GUGGaC-GUCGaCGUGG-------UGaCGGUGCU- -5'
10368 5' -58.2 NC_002687.1 + 275692 0.66 0.922953
Target:  5'- cCGCUcGCAGCUG-ACCcCUcucgGCCGCGAg -3'
miRNA:   3'- -GUGGaCGUCGACgUGGuGA----CGGUGCU- -5'
10368 5' -58.2 NC_002687.1 + 224480 0.66 0.922953
Target:  5'- cCACC-GcCAGCgccaGCGCCACcGCCACc- -3'
miRNA:   3'- -GUGGaC-GUCGa---CGUGGUGaCGGUGcu -5'
10368 5' -58.2 NC_002687.1 + 212134 0.66 0.917621
Target:  5'- cCAUCUGCAGCcacucGCccacGCCACUGgCACu- -3'
miRNA:   3'- -GUGGACGUCGa----CG----UGGUGACgGUGcu -5'
10368 5' -58.2 NC_002687.1 + 115743 0.66 0.917621
Target:  5'- aCACCUGguGCUuuccaGgCGCUGCgACGGa -3'
miRNA:   3'- -GUGGACguCGAcg---UgGUGACGgUGCU- -5'
10368 5' -58.2 NC_002687.1 + 111429 0.66 0.917621
Target:  5'- uGCCUGCAcGCgaucggUGCAUCcgACUGCgACGGu -3'
miRNA:   3'- gUGGACGU-CG------ACGUGG--UGACGgUGCU- -5'
10368 5' -58.2 NC_002687.1 + 184422 0.67 0.912074
Target:  5'- cCGCCUGCAGCUGgagucugucaaaCACUuCUuCCugGAa -3'
miRNA:   3'- -GUGGACGUCGAC------------GUGGuGAcGGugCU- -5'
10368 5' -58.2 NC_002687.1 + 96739 0.67 0.905726
Target:  5'- aCACCUuucauccGCGGCgccgGCACCAa-GCaCGCGAg -3'
miRNA:   3'- -GUGGA-------CGUCGa---CGUGGUgaCG-GUGCU- -5'
10368 5' -58.2 NC_002687.1 + 237116 0.67 0.899732
Target:  5'- aGCCUGCAGCgGCugggcaggcucacGCgGCUuCCGCGGa -3'
miRNA:   3'- gUGGACGUCGaCG-------------UGgUGAcGGUGCU- -5'
10368 5' -58.2 NC_002687.1 + 24060 0.67 0.894157
Target:  5'- gGCCUGUcccacuGcCUGCACUccgACUGCCGCa- -3'
miRNA:   3'- gUGGACGu-----C-GACGUGG---UGACGGUGcu -5'
10368 5' -58.2 NC_002687.1 + 229378 0.67 0.894157
Target:  5'- uCACCgUGCuacCUGCACCACgUGUUACGu -3'
miRNA:   3'- -GUGG-ACGuc-GACGUGGUG-ACGGUGCu -5'
10368 5' -58.2 NC_002687.1 + 126340 0.67 0.894157
Target:  5'- ---aUGCAGCUGCACCcucGCUGCUg--- -3'
miRNA:   3'- guggACGUCGACGUGG---UGACGGugcu -5'
10368 5' -58.2 NC_002687.1 + 13312 0.67 0.887767
Target:  5'- gCugCUGUgaucGGCUGCGCUcCUGCgACGu -3'
miRNA:   3'- -GugGACG----UCGACGUGGuGACGgUGCu -5'
10368 5' -58.2 NC_002687.1 + 292514 0.67 0.887767
Target:  5'- uCAUCUGagaAGCUGCugCAgCUGCUAUa- -3'
miRNA:   3'- -GUGGACg--UCGACGugGU-GACGGUGcu -5'
10368 5' -58.2 NC_002687.1 + 134164 0.67 0.881173
Target:  5'- uCACCUGguGCUaagcccGC-CCACgcuUGCCACa- -3'
miRNA:   3'- -GUGGACguCGA------CGuGGUG---ACGGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.