miRNA: 3'- aCGU-ACCACGGCccUUCuuCGUAGGC- -5'
miRNA: 3'- aCGUACc--ACGGCCCUUCUUCgu--AGGC- -5'
miRNA: 3'- -ACGUACCACGGCCCuucuuCGuAGGc -5'
miRNA: 3'- -ACGUACCACGGCCCUUCUUCGUAGGC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1037 | 5' | -55.4 | NC_000924.1 | + | 38104 | 0.7 | 0.462259 |
|
Target: 5'- cGCAcUGGUGCCGcuGAGc-GCAUCCGg -3' miRNA: 3'- aCGU-ACCACGGCccUUCuuCGUAGGC- -5' |
|||||||
| 1037 | 5' | -55.4 | NC_000924.1 | + | 20594 | 0.7 | 0.45234 |
|
Target: 5'- aGCGUGaauUGCCGGGAGGGAGaaccUCUGu -3' miRNA: 3'- aCGUACc--ACGGCCCUUCUUCgu--AGGC- -5' |
|||||||
| 1037 | 5' | -55.4 | NC_000924.1 | + | 22964 | 0.74 | 0.267914 |
|
Target: 5'- cUGCAUGGUGCCGGGu----GCcUCCc -3' miRNA: 3'- -ACGUACCACGGCCCuucuuCGuAGGc -5' |
|||||||
| 1037 | 5' | -55.4 | NC_000924.1 | + | 14796 | 1.09 | 0.001094 |
|
Target: 5'- uUGCAUGGUGCCGGGAAGAAGCAUCCGu -3' miRNA: 3'- -ACGUACCACGGCCCUUCUUCGUAGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home