miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10370 3' -57.5 NC_002687.1 + 176018 0.66 0.966009
Target:  5'- cAUGCGUCGCgaacuugaCACGaGUGACGuuCCa- -3'
miRNA:   3'- -UACGUAGCGa-------GUGC-CACUGCugGGgg -5'
10370 3' -57.5 NC_002687.1 + 82849 0.66 0.966009
Target:  5'- -aGCAUUGCU--CGGUGAgagcucggauccCGACCCUg -3'
miRNA:   3'- uaCGUAGCGAguGCCACU------------GCUGGGGg -5'
10370 3' -57.5 NC_002687.1 + 299189 0.66 0.965098
Target:  5'- -gGCGUCGCUUACGGggguaacauugccaUGACcguuGAUCCUg -3'
miRNA:   3'- uaCGUAGCGAGUGCC--------------ACUG----CUGGGGg -5'
10370 3' -57.5 NC_002687.1 + 143870 0.66 0.962586
Target:  5'- cUGag-CGCUCAUGGUcagaacgauuuguGACGguaaguACCCCCg -3'
miRNA:   3'- uACguaGCGAGUGCCA-------------CUGC------UGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 77201 0.66 0.959612
Target:  5'- cAUGuCGUUGUUCACGGUGAaGGCgCgCa -3'
miRNA:   3'- -UAC-GUAGCGAGUGCCACUgCUGgGgG- -5'
10370 3' -57.5 NC_002687.1 + 13611 0.66 0.959612
Target:  5'- aGUGagaucuugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- -UACgua-----GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 258773 0.66 0.957541
Target:  5'- cAUGCAUU-CUCugcaGCGGUGaaggucacgaguucgGCGACCCCa -3'
miRNA:   3'- -UACGUAGcGAG----UGCCAC---------------UGCUGGGGg -5'
10370 3' -57.5 NC_002687.1 + 14739 0.66 0.956121
Target:  5'- -aGag-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCguaGCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 86732 0.66 0.956121
Target:  5'- -aGCAUgccggaccCGCUgACGGcgaUGACGgACCCCa -3'
miRNA:   3'- uaCGUA--------GCGAgUGCC---ACUGC-UGGGGg -5'
10370 3' -57.5 NC_002687.1 + 260580 0.66 0.956121
Target:  5'- aGUGgGUCGaUCACGuUGGCGGCCaCCa -3'
miRNA:   3'- -UACgUAGCgAGUGCcACUGCUGGgGG- -5'
10370 3' -57.5 NC_002687.1 + 13881 0.66 0.956121
Target:  5'- -aGag-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCguaGCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 15597 0.66 0.956121
Target:  5'- -aGag-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCguaGCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 96114 0.66 0.95243
Target:  5'- cAUGCcggCGacaUgGCGGUucGCGGCCCCCg -3'
miRNA:   3'- -UACGua-GCg--AgUGCCAc-UGCUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 121720 0.66 0.948537
Target:  5'- gGUG-GUgGUUUACGGUcGACGACCUCUu -3'
miRNA:   3'- -UACgUAgCGAGUGCCA-CUGCUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 64586 0.67 0.940131
Target:  5'- -gGCAa-GCUCugGGcu-CGACCCCUg -3'
miRNA:   3'- uaCGUagCGAGugCCacuGCUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 323473 0.67 0.940131
Target:  5'- uGUGCGuucuUCGCUCACGuGaucuggGACGACgCgCCg -3'
miRNA:   3'- -UACGU----AGCGAGUGC-Ca-----CUGCUGgG-GG- -5'
10370 3' -57.5 NC_002687.1 + 306949 0.67 0.930887
Target:  5'- uUGC-UCGaaCGCGG-GAaguaGACCCCCu -3'
miRNA:   3'- uACGuAGCgaGUGCCaCUg---CUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 154257 0.67 0.925948
Target:  5'- aGUGCAUCGaaCACGGguuu--CCCCCa -3'
miRNA:   3'- -UACGUAGCgaGUGCCacugcuGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 16189 0.68 0.920798
Target:  5'- -aGUG-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUaGCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 16785 0.68 0.920798
Target:  5'- -aGUG-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUaGCGAGUGCCA-CUGcUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.