miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10370 3' -57.5 NC_002687.1 + 110244 0.71 0.7686
Target:  5'- gAUGCGUCGUUCACGGcGACaucaaGCCCg- -3'
miRNA:   3'- -UACGUAGCGAGUGCCaCUGc----UGGGgg -5'
10370 3' -57.5 NC_002687.1 + 14473 0.68 0.920798
Target:  5'- -aGUG-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUaGCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 143870 0.66 0.962586
Target:  5'- cUGag-CGCUCAUGGUcagaacgauuuguGACGguaaguACCCCCg -3'
miRNA:   3'- uACguaGCGAGUGCCA-------------CUGC------UGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 148960 0.76 0.532715
Target:  5'- -aGCAUCGCUCGauaccucaaGGUgGACGACUUCCa -3'
miRNA:   3'- uaCGUAGCGAGUg--------CCA-CUGCUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 176765 0.75 0.570347
Target:  5'- cUGCAUCuCcCugGGUcACGACCCCCg -3'
miRNA:   3'- uACGUAGcGaGugCCAcUGCUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 14396 0.74 0.598993
Target:  5'- -cGCAgacagugCGCUCACGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUa------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 15520 0.74 0.598993
Target:  5'- -cGCAgacagugCGCUCACGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUa------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 16112 0.74 0.598993
Target:  5'- -cGCAgacagugCGCUCACGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUa------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 16708 0.74 0.598993
Target:  5'- -cGCAgacagugCGCUCACGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUa------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 198800 0.69 0.87213
Target:  5'- uUGguUCGUUCGCGGUGGUGGCCg-- -3'
miRNA:   3'- uACguAGCGAGUGCCACUGCUGGggg -5'
10370 3' -57.5 NC_002687.1 + 15843 0.7 0.806452
Target:  5'- uAUGCAgagaagaaauagugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- -UACGUa-------------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 15316 0.7 0.806452
Target:  5'- uAUGCAgagaagaaauagugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- -UACGUa-------------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 217728 0.71 0.786102
Target:  5'- -cGUAUCGCUUAaaGGUGAC-ACCCCg -3'
miRNA:   3'- uaCGUAGCGAGUg-CCACUGcUGGGGg -5'
10370 3' -57.5 NC_002687.1 + 72689 0.69 0.850647
Target:  5'- -gGCGUauuuUGCUcCACaGaGACGACCCCCg -3'
miRNA:   3'- uaCGUA----GCGA-GUGcCaCUGCUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 13803 0.7 0.803114
Target:  5'- -cGCAggacagugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUa-------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 14984 0.7 0.806452
Target:  5'- uAUGCAgagaagaaauagugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- -UACGUa-------------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 71106 0.69 0.865153
Target:  5'- uUGCAUCGagaUgACGGUGcugaACGGCaCCCUg -3'
miRNA:   3'- uACGUAGCg--AgUGCCAC----UGCUG-GGGG- -5'
10370 3' -57.5 NC_002687.1 + 16189 0.68 0.920798
Target:  5'- -aGUG-CGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUaGCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 14661 0.7 0.803114
Target:  5'- -cGCAggacagugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- uaCGUa-------GCGAGUGCCA-CUGcUGGGGG- -5'
10370 3' -57.5 NC_002687.1 + 14126 0.7 0.806452
Target:  5'- uAUGCAgagaagaaauagugCGCUCAUGGUcGAUcGCCCCUg -3'
miRNA:   3'- -UACGUa-------------GCGAGUGCCA-CUGcUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.