miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10372 3' -56.8 NC_002687.1 + 205327 0.66 0.977396
Target:  5'- aCGCCGCccaGUCGcagguguUUGAGAgaGCCACCAa -3'
miRNA:   3'- -GCGGUG---CAGCu------GGUUCUgaCGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 211996 0.66 0.977396
Target:  5'- uCGCCaACGUCuuGCCGuucGACUGCUGCUu -3'
miRNA:   3'- -GCGG-UGCAGc-UGGUu--CUGACGGUGGu -5'
10372 3' -56.8 NC_002687.1 + 304723 0.66 0.977396
Target:  5'- aGCCcaACcUCGACCAAauccuccGCUGCCAUCGu -3'
miRNA:   3'- gCGG--UGcAGCUGGUUc------UGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 90677 0.66 0.975065
Target:  5'- uCGCgACGUCGACCAcu-UUGCacggcaGCCGg -3'
miRNA:   3'- -GCGgUGCAGCUGGUucuGACGg-----UGGU- -5'
10372 3' -56.8 NC_002687.1 + 66550 0.66 0.975065
Target:  5'- gGUCGCGUUGACgGGGACgagCACCu -3'
miRNA:   3'- gCGGUGCAGCUGgUUCUGacgGUGGu -5'
10372 3' -56.8 NC_002687.1 + 263037 0.66 0.975065
Target:  5'- aCGCCACGaccCGugCAGGGCcGCgACg- -3'
miRNA:   3'- -GCGGUGCa--GCugGUUCUGaCGgUGgu -5'
10372 3' -56.8 NC_002687.1 + 176209 0.66 0.975065
Target:  5'- gCGCgAUGUCGAgCAuGAUcguucccaUGCCACCc -3'
miRNA:   3'- -GCGgUGCAGCUgGUuCUG--------ACGGUGGu -5'
10372 3' -56.8 NC_002687.1 + 112167 0.66 0.975065
Target:  5'- uGCUACGUUGAUCAcaucucugaAGugU-CCGCCGa -3'
miRNA:   3'- gCGGUGCAGCUGGU---------UCugAcGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 282415 0.66 0.972562
Target:  5'- uGCCACuaCGGCCc---CUGCCGCCGc -3'
miRNA:   3'- gCGGUGcaGCUGGuucuGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 276957 0.66 0.972562
Target:  5'- aGCUugGUCgGGgUggGugUGCCACa- -3'
miRNA:   3'- gCGGugCAG-CUgGuuCugACGGUGgu -5'
10372 3' -56.8 NC_002687.1 + 96522 0.66 0.969884
Target:  5'- aCGCagugUugGUCGcACCAGGACUucucGgCACCAa -3'
miRNA:   3'- -GCG----GugCAGC-UGGUUCUGA----CgGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 235155 0.66 0.96819
Target:  5'- aGCuCGCGUCgcucaggcggaaaagGACCucgcaAAGGCUGCCGCgAa -3'
miRNA:   3'- gCG-GUGCAG---------------CUGG-----UUCUGACGGUGgU- -5'
10372 3' -56.8 NC_002687.1 + 234361 0.66 0.967024
Target:  5'- gGcCCAC-UCGGCCAAGAaacGCCACgAg -3'
miRNA:   3'- gC-GGUGcAGCUGGUUCUga-CGGUGgU- -5'
10372 3' -56.8 NC_002687.1 + 314037 0.66 0.966129
Target:  5'- gGCCGCGuUCGGCCGAGGaaacguccgugcacCUGgaaUACCAa -3'
miRNA:   3'- gCGGUGC-AGCUGGUUCU--------------GACg--GUGGU- -5'
10372 3' -56.8 NC_002687.1 + 271398 0.66 0.963977
Target:  5'- uCGCC-CGUCGAUgCAccuGACUcgGCCACUAu -3'
miRNA:   3'- -GCGGuGCAGCUG-GUu--CUGA--CGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 224822 0.66 0.963977
Target:  5'- gGCCACGagCuGCCGcugccGCUGCCGCCGc -3'
miRNA:   3'- gCGGUGCa-GcUGGUuc---UGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 18625 0.66 0.963977
Target:  5'- gGCgGCGUgaguguggGACCAGaaGCUGCCGCCAc -3'
miRNA:   3'- gCGgUGCAg-------CUGGUUc-UGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 121999 0.67 0.960738
Target:  5'- aGCUGggUGUCaucGCCAAGuACUGCUACCAa -3'
miRNA:   3'- gCGGU--GCAGc--UGGUUC-UGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 178018 0.67 0.960738
Target:  5'- gGCCGCGUCGACU---ACUGCUcUCu -3'
miRNA:   3'- gCGGUGCAGCUGGuucUGACGGuGGu -5'
10372 3' -56.8 NC_002687.1 + 118159 0.67 0.960738
Target:  5'- nCGCCuGCGUCGaACgAGGACgacggUGCCGCa- -3'
miRNA:   3'- -GCGG-UGCAGC-UGgUUCUG-----ACGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.