miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10372 3' -56.8 NC_002687.1 + 3820 0.68 0.937075
Target:  5'- gCGCCGCGUCGACUggGuCgGUCGa-- -3'
miRNA:   3'- -GCGGUGCAGCUGGuuCuGaCGGUggu -5'
10372 3' -56.8 NC_002687.1 + 10674 0.68 0.937075
Target:  5'- cCGCCACuGcCGccGCCAcuGCUGCUACCu -3'
miRNA:   3'- -GCGGUG-CaGC--UGGUucUGACGGUGGu -5'
10372 3' -56.8 NC_002687.1 + 18625 0.66 0.963977
Target:  5'- gGCgGCGUgaguguggGACCAGaaGCUGCCGCCAc -3'
miRNA:   3'- gCGgUGCAg-------CUGGUUc-UGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 28296 0.67 0.949832
Target:  5'- aGCCugGUCGAa----GCgGCCACCAc -3'
miRNA:   3'- gCGGugCAGCUgguucUGaCGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 28648 0.68 0.932401
Target:  5'- gGCCGCuUCGACC-AGGCUG-CACUc -3'
miRNA:   3'- gCGGUGcAGCUGGuUCUGACgGUGGu -5'
10372 3' -56.8 NC_002687.1 + 39481 0.7 0.874101
Target:  5'- gGCCuuGUCGACCAAGGgUGUCGa-- -3'
miRNA:   3'- gCGGugCAGCUGGUUCUgACGGUggu -5'
10372 3' -56.8 NC_002687.1 + 40525 0.71 0.805304
Target:  5'- aGCCACGUCG-CCAcGcCUcCCACCAc -3'
miRNA:   3'- gCGGUGCAGCuGGUuCuGAcGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 41394 0.67 0.945789
Target:  5'- aGCCGUGUCGAUguuGGugUGCCGCa- -3'
miRNA:   3'- gCGGUGCAGCUGgu-UCugACGGUGgu -5'
10372 3' -56.8 NC_002687.1 + 45018 0.7 0.860027
Target:  5'- gCGCaaacaucuCGUCGuCCu-GGCUGCCACCGg -3'
miRNA:   3'- -GCGgu------GCAGCuGGuuCUGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 56484 0.68 0.932401
Target:  5'- uCGCCGCGUcagCGACCAuguGGGCaacacuUGCCAUg- -3'
miRNA:   3'- -GCGGUGCA---GCUGGU---UCUG------ACGGUGgu -5'
10372 3' -56.8 NC_002687.1 + 60881 0.7 0.845221
Target:  5'- aGUCGCGUgGACCAcgcauucucgaAGaACUGCaCACCGg -3'
miRNA:   3'- gCGGUGCAgCUGGU-----------UC-UGACG-GUGGU- -5'
10372 3' -56.8 NC_002687.1 + 61175 0.69 0.880851
Target:  5'- uCGCCGC-UCGACgaGGGACUGCCGa-- -3'
miRNA:   3'- -GCGGUGcAGCUGg-UUCUGACGGUggu -5'
10372 3' -56.8 NC_002687.1 + 66550 0.66 0.975065
Target:  5'- gGUCGCGUUGACgGGGACgagCACCu -3'
miRNA:   3'- gCGGUGCAGCUGgUUCUGacgGUGGu -5'
10372 3' -56.8 NC_002687.1 + 85353 0.68 0.927515
Target:  5'- gGUCcCGUCGGuCCGGcGGgUGCCACCGg -3'
miRNA:   3'- gCGGuGCAGCU-GGUU-CUgACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 90677 0.66 0.975065
Target:  5'- uCGCgACGUCGACCAcu-UUGCacggcaGCCGg -3'
miRNA:   3'- -GCGgUGCAGCUGGUucuGACGg-----UGGU- -5'
10372 3' -56.8 NC_002687.1 + 96522 0.66 0.969884
Target:  5'- aCGCagugUugGUCGcACCAGGACUucucGgCACCAa -3'
miRNA:   3'- -GCG----GugCAGC-UGGUUCUGA----CgGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 103027 0.7 0.876824
Target:  5'- gGCCACGaaGgcugcagccaaggccGCCAAGGCUGCaGCCAa -3'
miRNA:   3'- gCGGUGCagC---------------UGGUUCUGACGgUGGU- -5'
10372 3' -56.8 NC_002687.1 + 103115 0.67 0.957303
Target:  5'- cCGUCGCuGUCG-CCGucGCUGUCGCCGu -3'
miRNA:   3'- -GCGGUG-CAGCuGGUucUGACGGUGGU- -5'
10372 3' -56.8 NC_002687.1 + 106992 0.7 0.837557
Target:  5'- gCGCCACGgacccgaGACC-GGGCUGCCugacCCGa -3'
miRNA:   3'- -GCGGUGCag-----CUGGuUCUGACGGu---GGU- -5'
10372 3' -56.8 NC_002687.1 + 112167 0.66 0.975065
Target:  5'- uGCUACGUUGAUCAcaucucugaAGugU-CCGCCGa -3'
miRNA:   3'- gCGGUGCAGCUGGU---------UCugAcGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.