miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10372 5' -60.2 NC_002687.1 + 76624 0.66 0.91395
Target:  5'- aGACGGUGGCG-GCgaCGuGGACGUUu- -3'
miRNA:   3'- -CUGCCACCGCuCGg-GCuUCUGCGGcu -5'
10372 5' -60.2 NC_002687.1 + 25138 0.66 0.908451
Target:  5'- ---cGUGGCGAGCCUGcuaucGGACGUCu- -3'
miRNA:   3'- cugcCACCGCUCGGGCu----UCUGCGGcu -5'
10372 5' -60.2 NC_002687.1 + 173505 0.66 0.908451
Target:  5'- aGGCGGaGGUGGGaCUGGAGGCGCa-- -3'
miRNA:   3'- -CUGCCaCCGCUCgGGCUUCUGCGgcu -5'
10372 5' -60.2 NC_002687.1 + 173553 0.66 0.908451
Target:  5'- aGGCGGaGGUGGGaCUGGAGGCGCaGGu -3'
miRNA:   3'- -CUGCCaCCGCUCgGGCUUCUGCGgCU- -5'
10372 5' -60.2 NC_002687.1 + 102104 0.66 0.905056
Target:  5'- aGCGGUGGaUGucCCUaccgacguuaggguaGAGGGCGCCGAa -3'
miRNA:   3'- cUGCCACC-GCucGGG---------------CUUCUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 307753 0.66 0.902753
Target:  5'- gGACGGaucugUGGa-GGCCauggccaucggCGAGGGCGCCGAc -3'
miRNA:   3'- -CUGCC-----ACCgcUCGG-----------GCUUCUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 34852 0.66 0.902753
Target:  5'- -cCGGUGGgaucuucccgaCGA-CCUGAGGACGCCa- -3'
miRNA:   3'- cuGCCACC-----------GCUcGGGCUUCUGCGGcu -5'
10372 5' -60.2 NC_002687.1 + 253497 0.66 0.896858
Target:  5'- cACGGUGGUGA-CCUGuguGCGCUGAc -3'
miRNA:   3'- cUGCCACCGCUcGGGCuucUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 164868 0.66 0.896858
Target:  5'- uGGCGGaGGCGAcgaaagugGCaacgaaGAAGugGCCGAc -3'
miRNA:   3'- -CUGCCaCCGCU--------CGgg----CUUCugCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 72199 0.66 0.890768
Target:  5'- cGAC--UGGCcaGGCCCGGcGGAUGCCGAa -3'
miRNA:   3'- -CUGccACCGc-UCGGGCU-UCUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 3966 0.66 0.890768
Target:  5'- gGACGGaUGGaGGGauugaCCGggGGCGgCGAg -3'
miRNA:   3'- -CUGCC-ACCgCUCg----GGCuuCUGCgGCU- -5'
10372 5' -60.2 NC_002687.1 + 118170 0.67 0.878015
Target:  5'- uGCGGUGcagucGCaGAGCCCGuauGCGCCGu -3'
miRNA:   3'- cUGCCAC-----CG-CUCGGGCuucUGCGGCu -5'
10372 5' -60.2 NC_002687.1 + 224362 0.67 0.878015
Target:  5'- cGAUGGcgaUGGCGAugcuacuCCCGAugccGAUGCCGAu -3'
miRNA:   3'- -CUGCC---ACCGCUc------GGGCUu---CUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 10446 0.67 0.871358
Target:  5'- aGCGGUagcaucGGCcucGGGCCCGuuGAUGCUGGc -3'
miRNA:   3'- cUGCCA------CCG---CUCGGGCuuCUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 232732 0.67 0.863827
Target:  5'- uGACGGcaaacguuauuauUGGCGAGUuagaCGAGGAgGCCa- -3'
miRNA:   3'- -CUGCC-------------ACCGCUCGg---GCUUCUgCGGcu -5'
10372 5' -60.2 NC_002687.1 + 224997 0.67 0.862434
Target:  5'- cGGCGGUGGagcugGAGCUgGAgcgggugguggcguGGGCGuCCGAg -3'
miRNA:   3'- -CUGCCACCg----CUCGGgCU--------------UCUGC-GGCU- -5'
10372 5' -60.2 NC_002687.1 + 223491 0.67 0.857506
Target:  5'- uGCGGUGGCgGGGgCgGggGAaGCCGu -3'
miRNA:   3'- cUGCCACCG-CUCgGgCuuCUgCGGCu -5'
10372 5' -60.2 NC_002687.1 + 23030 0.67 0.850319
Target:  5'- aGACGGUGGCGAgGUUCGgcGAgcaaaGCCu- -3'
miRNA:   3'- -CUGCCACCGCU-CGGGCuuCUg----CGGcu -5'
10372 5' -60.2 NC_002687.1 + 254273 0.67 0.850319
Target:  5'- aGACGGUGuCGcagcAGCCaCGcguGACGCCGGa -3'
miRNA:   3'- -CUGCCACcGC----UCGG-GCuu-CUGCGGCU- -5'
10372 5' -60.2 NC_002687.1 + 168630 0.67 0.842964
Target:  5'- uGGCGGcaaCGcGCCCGGAGAaaaGCCGAg -3'
miRNA:   3'- -CUGCCaccGCuCGGGCUUCUg--CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.