miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10377 3' -51 NC_002687.1 + 161978 0.66 0.999835
Target:  5'- aCUAU-GCUGgcggaGUCGuUGGUGUCGUa -3'
miRNA:   3'- gGAUAgCGGCa----CAGUuACCACAGCAg -5'
10377 3' -51 NC_002687.1 + 308856 0.66 0.999739
Target:  5'- gCCUccCGCUGc-UCGGUGGUGggggCGUCa -3'
miRNA:   3'- -GGAuaGCGGCacAGUUACCACa---GCAG- -5'
10377 3' -51 NC_002687.1 + 209152 0.66 0.999733
Target:  5'- cCCUGggGUCGUucucggcaccaacGUCGucGUGGUcGUCGUCg -3'
miRNA:   3'- -GGAUagCGGCA-------------CAGU--UACCA-CAGCAG- -5'
10377 3' -51 NC_002687.1 + 208700 0.66 0.999597
Target:  5'- uCCcAUCGUCcuugagGUCcuUGGUGUCGUUg -3'
miRNA:   3'- -GGaUAGCGGca----CAGuuACCACAGCAG- -5'
10377 3' -51 NC_002687.1 + 203344 0.67 0.999391
Target:  5'- -aUGUCGUCGUgaGUCAccGUGGUGgaGUCa -3'
miRNA:   3'- ggAUAGCGGCA--CAGU--UACCACagCAG- -5'
10377 3' -51 NC_002687.1 + 290881 0.67 0.999391
Target:  5'- aCCUcgUGCagcaGUGUU-GUGGUGUCGg- -3'
miRNA:   3'- -GGAuaGCGg---CACAGuUACCACAGCag -5'
10377 3' -51 NC_002687.1 + 142545 0.67 0.9991
Target:  5'- gCCUGUCGUCGUcGUCcucGUGGccUGcaccuUCGUCg -3'
miRNA:   3'- -GGAUAGCGGCA-CAGu--UACC--AC-----AGCAG- -5'
10377 3' -51 NC_002687.1 + 89378 0.67 0.998915
Target:  5'- aCCUcUUGCgGUGuuUCGAUGGUGgaGUCa -3'
miRNA:   3'- -GGAuAGCGgCAC--AGUUACCACagCAG- -5'
10377 3' -51 NC_002687.1 + 278713 0.68 0.998151
Target:  5'- uCCgcaguuUCGUCGuUGUCGGUGGUGcCGg- -3'
miRNA:   3'- -GGau----AGCGGC-ACAGUUACCACaGCag -5'
10377 3' -51 NC_002687.1 + 106900 0.68 0.997812
Target:  5'- ----aCGCCGUGUUGAcGGUGUUugaGUCg -3'
miRNA:   3'- ggauaGCGGCACAGUUaCCACAG---CAG- -5'
10377 3' -51 NC_002687.1 + 89697 0.68 0.997584
Target:  5'- ----aUGCCGUGUCcacggugucuccgccGAggucGGUGUCGUCg -3'
miRNA:   3'- ggauaGCGGCACAG---------------UUa---CCACAGCAG- -5'
10377 3' -51 NC_002687.1 + 99415 0.69 0.996469
Target:  5'- --gGUCGCCaUGUCAGcGGcGUUGUCg -3'
miRNA:   3'- ggaUAGCGGcACAGUUaCCaCAGCAG- -5'
10377 3' -51 NC_002687.1 + 18586 0.69 0.994513
Target:  5'- ---uUCGCCgGUGcugCGAcGGUGUCGUCc -3'
miRNA:   3'- ggauAGCGG-CACa--GUUaCCACAGCAG- -5'
10377 3' -51 NC_002687.1 + 247826 0.69 0.994513
Target:  5'- ---uUCGCCGUcGUCAucgGGUGUuaUGUCa -3'
miRNA:   3'- ggauAGCGGCA-CAGUua-CCACA--GCAG- -5'
10377 3' -51 NC_002687.1 + 41334 0.69 0.994513
Target:  5'- gCCgcaaGCCGUGUCGAuguUGGUGUgCGg- -3'
miRNA:   3'- -GGauagCGGCACAGUU---ACCACA-GCag -5'
10377 3' -51 NC_002687.1 + 41388 0.7 0.992779
Target:  5'- gCCgcaaGCCGUGUCGAuguUGGUGUgccgcacgcCGUCc -3'
miRNA:   3'- -GGauagCGGCACAGUU---ACCACA---------GCAG- -5'
10377 3' -51 NC_002687.1 + 215715 0.7 0.991761
Target:  5'- --aGUCGCaCGUggcaucgucGUCGGUGGcgGUCGUCg -3'
miRNA:   3'- ggaUAGCG-GCA---------CAGUUACCa-CAGCAG- -5'
10377 3' -51 NC_002687.1 + 281925 0.71 0.986511
Target:  5'- ---uUUGCCGUGUCucgGGaUGUUGUCa -3'
miRNA:   3'- ggauAGCGGCACAGuuaCC-ACAGCAG- -5'
10377 3' -51 NC_002687.1 + 332013 0.71 0.984865
Target:  5'- aCUGUCG--GUGUCcgagcUGGUGUCGUCa -3'
miRNA:   3'- gGAUAGCggCACAGuu---ACCACAGCAG- -5'
10377 3' -51 NC_002687.1 + 41517 0.72 0.97672
Target:  5'- gCCgcaaGCCGUGUCGAuguUGGUGUUG-Cg -3'
miRNA:   3'- -GGauagCGGCACAGUU---ACCACAGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.