miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10377 5' -47.9 NC_002687.1 + 110612 0.66 0.999998
Target:  5'- uUGUCGGgcuuGAUGUCGcCGugaACGACGCAu -3'
miRNA:   3'- gAUAGCU----UUAUAGCcGUg--UGCUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 313801 0.66 0.999998
Target:  5'- ---aCGAGcg--CGGCuuucuCGCGACGCAg -3'
miRNA:   3'- gauaGCUUuauaGCCGu----GUGCUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 123297 0.66 0.999997
Target:  5'- cCUA-CGAGAcgAUCGGCGguUACGACGa- -3'
miRNA:   3'- -GAUaGCUUUa-UAGCCGU--GUGCUGCgu -5'
10377 5' -47.9 NC_002687.1 + 292795 0.66 0.999997
Target:  5'- aCUGgaagCGGugg--CGGC-CGCGGCGCAc -3'
miRNA:   3'- -GAUa---GCUuuauaGCCGuGUGCUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 95006 0.66 0.999997
Target:  5'- -cAUCGGGAgaguugcgCGGCACA-GACGUg -3'
miRNA:   3'- gaUAGCUUUaua-----GCCGUGUgCUGCGu -5'
10377 5' -47.9 NC_002687.1 + 99217 0.66 0.999997
Target:  5'- -gGUCGGggauGGUGUUGGCucccACGCGGCGgGu -3'
miRNA:   3'- gaUAGCU----UUAUAGCCG----UGUGCUGCgU- -5'
10377 5' -47.9 NC_002687.1 + 252722 0.66 0.999997
Target:  5'- gUGUCuGGAAgaauucgAUCGGCcgucGCGCGGCGUc -3'
miRNA:   3'- gAUAG-CUUUa------UAGCCG----UGUGCUGCGu -5'
10377 5' -47.9 NC_002687.1 + 295967 0.66 0.999996
Target:  5'- -gGUC-AAGUAcagguuuUCGGCACACGACa-- -3'
miRNA:   3'- gaUAGcUUUAU-------AGCCGUGUGCUGcgu -5'
10377 5' -47.9 NC_002687.1 + 68717 0.66 0.999996
Target:  5'- --cUCGAcAUAuuUCGGUACACcAUGCAg -3'
miRNA:   3'- gauAGCUuUAU--AGCCGUGUGcUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 297757 0.66 0.999996
Target:  5'- -gAUCGAGuuaucaAUCGGCGuCGCGAUgaGCAu -3'
miRNA:   3'- gaUAGCUUua----UAGCCGU-GUGCUG--CGU- -5'
10377 5' -47.9 NC_002687.1 + 29891 0.66 0.999996
Target:  5'- --cUCGA----UUGGUACAUGGCGCu -3'
miRNA:   3'- gauAGCUuuauAGCCGUGUGCUGCGu -5'
10377 5' -47.9 NC_002687.1 + 215283 0.66 0.999996
Target:  5'- -gAUCGAggaAAUAUCGGC-CGgGGUGCAg -3'
miRNA:   3'- gaUAGCU---UUAUAGCCGuGUgCUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 176894 0.66 0.999996
Target:  5'- gUGUCGAuagaucaGGUGUCGGgagguuccagcUACACGACGaCGu -3'
miRNA:   3'- gAUAGCU-------UUAUAGCC-----------GUGUGCUGC-GU- -5'
10377 5' -47.9 NC_002687.1 + 83573 0.66 0.999994
Target:  5'- -gGUUGAGAUuguaggUGGCgacgGCGCGACGCc -3'
miRNA:   3'- gaUAGCUUUAua----GCCG----UGUGCUGCGu -5'
10377 5' -47.9 NC_002687.1 + 7519 0.66 0.999994
Target:  5'- -aAUCGucaGAGUAUCGaCGCugGACGUu -3'
miRNA:   3'- gaUAGC---UUUAUAGCcGUGugCUGCGu -5'
10377 5' -47.9 NC_002687.1 + 213447 0.66 0.999994
Target:  5'- -gAUCGAgcAAUA-CGGUACAaaauuccgauCGGCGCAa -3'
miRNA:   3'- gaUAGCU--UUAUaGCCGUGU----------GCUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 280309 0.66 0.999994
Target:  5'- gUGUUGGAGUguguccagcGUCGGC--ACGugGCAg -3'
miRNA:   3'- gAUAGCUUUA---------UAGCCGugUGCugCGU- -5'
10377 5' -47.9 NC_002687.1 + 165933 0.67 0.999992
Target:  5'- uCUGUCGAcg---CGGCaaACGCGGCgGCGg -3'
miRNA:   3'- -GAUAGCUuuauaGCCG--UGUGCUG-CGU- -5'
10377 5' -47.9 NC_002687.1 + 97048 0.67 0.999992
Target:  5'- aUGUCGcAGaacGUGUCGGCGCu--ACGCAa -3'
miRNA:   3'- gAUAGC-UU---UAUAGCCGUGugcUGCGU- -5'
10377 5' -47.9 NC_002687.1 + 316184 0.67 0.999988
Target:  5'- --uUCGGGugcggcggCGGCACcCGGCGCGg -3'
miRNA:   3'- gauAGCUUuaua----GCCGUGuGCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.