miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10379 5' -47.8 NC_002687.1 + 146372 0.66 0.999995
Target:  5'- gGAGAAGCgGCGGCGCAggUUCuugaAGUCgGu -3'
miRNA:   3'- -CUCUUUG-CGCUGUGUa-AAG----UCAGgUu -5'
10379 5' -47.8 NC_002687.1 + 257691 0.66 0.999995
Target:  5'- uGGGAAuCGCGGCGCug-UCAG-CCu- -3'
miRNA:   3'- -CUCUUuGCGCUGUGuaaAGUCaGGuu -5'
10379 5' -47.8 NC_002687.1 + 258259 0.66 0.999983
Target:  5'- gGAGAuuCGCGuCACGgacagcggcgUCGGUCUAAg -3'
miRNA:   3'- -CUCUuuGCGCuGUGUaa--------AGUCAGGUU- -5'
10379 5' -47.8 NC_002687.1 + 149322 0.66 0.999983
Target:  5'- uGGAcaaGACGCGAacCAUUUCAGaCCAAg -3'
miRNA:   3'- cUCU---UUGCGCUguGUAAAGUCaGGUU- -5'
10379 5' -47.8 NC_002687.1 + 91679 0.67 0.999976
Target:  5'- cGAGAGACGCGGCAacga--AGUCgAGc -3'
miRNA:   3'- -CUCUUUGCGCUGUguaaagUCAGgUU- -5'
10379 5' -47.8 NC_002687.1 + 275955 0.67 0.999968
Target:  5'- --uGAGCGCGGCGCAaagagcCAGUCCu- -3'
miRNA:   3'- cucUUUGCGCUGUGUaaa---GUCAGGuu -5'
10379 5' -47.8 NC_002687.1 + 163326 0.67 0.999968
Target:  5'- -cGAGugGCGAaGCAgUUCAuGUCCGAc -3'
miRNA:   3'- cuCUUugCGCUgUGUaAAGU-CAGGUU- -5'
10379 5' -47.8 NC_002687.1 + 109203 0.67 0.999957
Target:  5'- aGAGGAGCGCGACGCcgg-CA--CCAAa -3'
miRNA:   3'- -CUCUUUGCGCUGUGuaaaGUcaGGUU- -5'
10379 5' -47.8 NC_002687.1 + 96535 0.67 0.999957
Target:  5'- aAGAcagAGCGCGACGCAgugUUGGUCgCAc -3'
miRNA:   3'- cUCU---UUGCGCUGUGUaa-AGUCAG-GUu -5'
10379 5' -47.8 NC_002687.1 + 57325 0.67 0.999957
Target:  5'- -uGAAACGUGGCGCAgcucaUCGGgucCCAAg -3'
miRNA:   3'- cuCUUUGCGCUGUGUaa---AGUCa--GGUU- -5'
10379 5' -47.8 NC_002687.1 + 323584 0.68 0.999903
Target:  5'- aGAGAAAUGCGACACAccgUGGUgCUAc -3'
miRNA:   3'- -CUCUUUGCGCUGUGUaaaGUCA-GGUu -5'
10379 5' -47.8 NC_002687.1 + 146047 0.69 0.999737
Target:  5'- cGGuAGACGaCGGCGCAg--CAGUCCGc -3'
miRNA:   3'- cUC-UUUGC-GCUGUGUaaaGUCAGGUu -5'
10379 5' -47.8 NC_002687.1 + 240748 0.69 0.999586
Target:  5'- uGAGAAGCGUGGCuguCAUUUCGGgCUu- -3'
miRNA:   3'- -CUCUUUGCGCUGu--GUAAAGUCaGGuu -5'
10379 5' -47.8 NC_002687.1 + 237209 0.69 0.999586
Target:  5'- cGAGAagaggcauccGACGCGACACcaaUUCGGUCg-- -3'
miRNA:   3'- -CUCU----------UUGCGCUGUGua-AAGUCAGguu -5'
10379 5' -47.8 NC_002687.1 + 170427 0.7 0.998311
Target:  5'- gGAGAuACGCGACAgCAgcUCGauGUCCGAc -3'
miRNA:   3'- -CUCUuUGCGCUGU-GUaaAGU--CAGGUU- -5'
10379 5' -47.8 NC_002687.1 + 5693 0.7 0.998311
Target:  5'- -cGAGGCGCuGACAUAUUUCugcguGUCUAAg -3'
miRNA:   3'- cuCUUUGCG-CUGUGUAAAGu----CAGGUU- -5'
10379 5' -47.8 NC_002687.1 + 252138 0.72 0.993814
Target:  5'- cGAGAGAUGCGugGCcaucucUCGGUCCu- -3'
miRNA:   3'- -CUCUUUGCGCugUGuaa---AGUCAGGuu -5'
10379 5' -47.8 NC_002687.1 + 196590 1.03 0.074961
Target:  5'- uGAGAAACGCGAUACAUUUCAGUCCAAg -3'
miRNA:   3'- -CUCUUUGCGCUGUGUAAAGUCAGGUU- -5'
10379 5' -47.8 NC_002687.1 + 222181 1.07 0.044388
Target:  5'- uGAGAAACGCGACACAUUUCAGUCCAAg -3'
miRNA:   3'- -CUCUUUGCGCUGUGUAAAGUCAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.