Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10379 | 5' | -47.8 | NC_002687.1 | + | 257691 | 0.66 | 0.999995 |
Target: 5'- uGGGAAuCGCGGCGCug-UCAG-CCu- -3' miRNA: 3'- -CUCUUuGCGCUGUGuaaAGUCaGGuu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 149322 | 0.66 | 0.999983 |
Target: 5'- uGGAcaaGACGCGAacCAUUUCAGaCCAAg -3' miRNA: 3'- cUCU---UUGCGCUguGUAAAGUCaGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 258259 | 0.66 | 0.999983 |
Target: 5'- gGAGAuuCGCGuCACGgacagcggcgUCGGUCUAAg -3' miRNA: 3'- -CUCUuuGCGCuGUGUaa--------AGUCAGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 163326 | 0.67 | 0.999968 |
Target: 5'- -cGAGugGCGAaGCAgUUCAuGUCCGAc -3' miRNA: 3'- cuCUUugCGCUgUGUaAAGU-CAGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 237209 | 0.69 | 0.999586 |
Target: 5'- cGAGAagaggcauccGACGCGACACcaaUUCGGUCg-- -3' miRNA: 3'- -CUCU----------UUGCGCUGUGua-AAGUCAGguu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 240748 | 0.69 | 0.999586 |
Target: 5'- uGAGAAGCGUGGCuguCAUUUCGGgCUu- -3' miRNA: 3'- -CUCUUUGCGCUGu--GUAAAGUCaGGuu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 170427 | 0.7 | 0.998311 |
Target: 5'- gGAGAuACGCGACAgCAgcUCGauGUCCGAc -3' miRNA: 3'- -CUCUuUGCGCUGU-GUaaAGU--CAGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 5693 | 0.7 | 0.998311 |
Target: 5'- -cGAGGCGCuGACAUAUUUCugcguGUCUAAg -3' miRNA: 3'- cuCUUUGCG-CUGUGUAAAGu----CAGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 252138 | 0.72 | 0.993814 |
Target: 5'- cGAGAGAUGCGugGCcaucucUCGGUCCu- -3' miRNA: 3'- -CUCUUUGCGCugUGuaa---AGUCAGGuu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 222181 | 1.07 | 0.044388 |
Target: 5'- uGAGAAACGCGACACAUUUCAGUCCAAg -3' miRNA: 3'- -CUCUUUGCGCUGUGUAAAGUCAGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 196590 | 1.03 | 0.074961 |
Target: 5'- uGAGAAACGCGAUACAUUUCAGUCCAAg -3' miRNA: 3'- -CUCUUUGCGCUGUGUAAAGUCAGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 146047 | 0.69 | 0.999737 |
Target: 5'- cGGuAGACGaCGGCGCAg--CAGUCCGc -3' miRNA: 3'- cUC-UUUGC-GCUGUGUaaaGUCAGGUu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 323584 | 0.68 | 0.999903 |
Target: 5'- aGAGAAAUGCGACACAccgUGGUgCUAc -3' miRNA: 3'- -CUCUUUGCGCUGUGUaaaGUCA-GGUu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 109203 | 0.67 | 0.999957 |
Target: 5'- aGAGGAGCGCGACGCcgg-CA--CCAAa -3' miRNA: 3'- -CUCUUUGCGCUGUGuaaaGUcaGGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 96535 | 0.67 | 0.999957 |
Target: 5'- aAGAcagAGCGCGACGCAgugUUGGUCgCAc -3' miRNA: 3'- cUCU---UUGCGCUGUGUaa-AGUCAG-GUu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 57325 | 0.67 | 0.999957 |
Target: 5'- -uGAAACGUGGCGCAgcucaUCGGgucCCAAg -3' miRNA: 3'- cuCUUUGCGCUGUGUaa---AGUCa--GGUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 275955 | 0.67 | 0.999968 |
Target: 5'- --uGAGCGCGGCGCAaagagcCAGUCCu- -3' miRNA: 3'- cucUUUGCGCUGUGUaaa---GUCAGGuu -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 91679 | 0.67 | 0.999976 |
Target: 5'- cGAGAGACGCGGCAacga--AGUCgAGc -3' miRNA: 3'- -CUCUUUGCGCUGUguaaagUCAGgUU- -5' |
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10379 | 5' | -47.8 | NC_002687.1 | + | 146372 | 0.66 | 0.999995 |
Target: 5'- gGAGAAGCgGCGGCGCAggUUCuugaAGUCgGu -3' miRNA: 3'- -CUCUUUG-CGCUGUGUa-AAG----UCAGgUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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