miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 3' -60.5 NC_002687.1 + 310157 0.66 0.891141
Target:  5'- cUCCCGAGCUgaUGCUu-CACCACCGc -3'
miRNA:   3'- uAGGGCUUGGagGCGGucGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 261687 0.66 0.891141
Target:  5'- --aUCGAGcCCUUCGCCAuGCcguuGCCGCCGc -3'
miRNA:   3'- uagGGCUU-GGAGGCGGU-CG----UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 279453 0.66 0.891141
Target:  5'- cAUCuuGGcacACCcCCGCCAGaCACaGCCGa -3'
miRNA:   3'- -UAGggCU---UGGaGGCGGUC-GUGgUGGC- -5'
10380 3' -60.5 NC_002687.1 + 330159 0.66 0.891141
Target:  5'- -gCCUGcGGCCUCUccuccgGCCA-CGCCACCGg -3'
miRNA:   3'- uaGGGC-UUGGAGG------CGGUcGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 130351 0.66 0.891141
Target:  5'- aGUCUUucGCCaCCGCCAcCGCCACCa -3'
miRNA:   3'- -UAGGGcuUGGaGGCGGUcGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 281325 0.66 0.884822
Target:  5'- -cCCCGGccGCCgcugCCGCCacccaGGCccCCGCCGa -3'
miRNA:   3'- uaGGGCU--UGGa---GGCGG-----UCGu-GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 302922 0.66 0.884822
Target:  5'- -cCCCGAGCgguuggaaUCCaCCAcGCACCGCCc -3'
miRNA:   3'- uaGGGCUUGg-------AGGcGGU-CGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 325777 0.66 0.877649
Target:  5'- gGUCCCaAGCggcguguauugcuCUCCGCC-GUugCACCGa -3'
miRNA:   3'- -UAGGGcUUG-------------GAGGCGGuCGugGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 173968 0.66 0.871612
Target:  5'- -gCCCccGCCUCCGCCucCGCCuCCGc -3'
miRNA:   3'- uaGGGcuUGGAGGCGGucGUGGuGGC- -5'
10380 3' -60.5 NC_002687.1 + 177867 0.66 0.871612
Target:  5'- gGUgCCGGugGCUUuCCaUCAGCACCACCGc -3'
miRNA:   3'- -UAgGGCU--UGGA-GGcGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 215648 0.66 0.870931
Target:  5'- cGUCgCCGAGCCUaucgccgUCGCCgAGCcuAUCGCCGu -3'
miRNA:   3'- -UAG-GGCUUGGA-------GGCGG-UCG--UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 259927 0.66 0.864728
Target:  5'- aGUCCCGccugcGCCUguuugcucaagUUGCCGGCGCCGCg- -3'
miRNA:   3'- -UAGGGCu----UGGA-----------GGCGGUCGUGGUGgc -5'
10380 3' -60.5 NC_002687.1 + 241502 0.66 0.864728
Target:  5'- uGUCCUGuGCCgaaaucacgCCGCCAccGUugGCCACCGc -3'
miRNA:   3'- -UAGGGCuUGGa--------GGCGGU--CG--UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 314141 0.66 0.86403
Target:  5'- -gCUCGucaAACCUCUcaucuccaaagcuGUCGGCACCGCCGc -3'
miRNA:   3'- uaGGGC---UUGGAGG-------------CGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 85506 0.66 0.857665
Target:  5'- cUCCCuGGACCcgcuggucCCGCCGGCGCgGCa- -3'
miRNA:   3'- uAGGG-CUUGGa-------GGCGGUCGUGgUGgc -5'
10380 3' -60.5 NC_002687.1 + 243677 0.66 0.857665
Target:  5'- uUCaaGAACUaCCaGCCucgcGGCACCACCGa -3'
miRNA:   3'- uAGggCUUGGaGG-CGG----UCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 308247 0.67 0.850426
Target:  5'- -cCCUGGGCgggCUCCGCCccuCACCACCc -3'
miRNA:   3'- uaGGGCUUG---GAGGCGGuc-GUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 279643 0.67 0.843018
Target:  5'- uUCUggUGGGCCgguggUGCCGGCACCACCu -3'
miRNA:   3'- uAGG--GCUUGGag---GCGGUCGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 55840 0.67 0.842268
Target:  5'- -cCCCGAuccauaccCCUCCauguauuuuucauGCCAGUAgCCACCGc -3'
miRNA:   3'- uaGGGCUu-------GGAGG-------------CGGUCGU-GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 227176 0.67 0.827714
Target:  5'- -cUCCGccACCgccaCCGCCAcCGCCACCGg -3'
miRNA:   3'- uaGGGCu-UGGa---GGCGGUcGUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.