miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 3' -60.5 NC_002687.1 + 2861 0.7 0.696283
Target:  5'- gGUCUCGAgggcgccgauggcGCCUUCGUCGGCACaGCCa -3'
miRNA:   3'- -UAGGGCU-------------UGGAGGCGGUCGUGgUGGc -5'
10380 3' -60.5 NC_002687.1 + 164516 0.7 0.697216
Target:  5'- cUUUCGucGCCUCCGCCAGCACacgACuCGg -3'
miRNA:   3'- uAGGGCu-UGGAGGCGGUCGUGg--UG-GC- -5'
10380 3' -60.5 NC_002687.1 + 97773 0.69 0.715759
Target:  5'- uUCUCGuuGCUggcaCCGCUGGCACCGCUGg -3'
miRNA:   3'- uAGGGCu-UGGa---GGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 309214 0.69 0.715759
Target:  5'- cGUCCaCGuauCCaUUCGCCaucAGCGCCACCGu -3'
miRNA:   3'- -UAGG-GCuu-GG-AGGCGG---UCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 279266 0.69 0.724942
Target:  5'- -aCCaCGAGCagcagguggUGCCGGCACCACCGg -3'
miRNA:   3'- uaGG-GCUUGgag------GCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 173855 0.69 0.734057
Target:  5'- aGUCCCaccuccGCCUCCGCCuccacuuGCGCCuCCa -3'
miRNA:   3'- -UAGGGcu----UGGAGGCGGu------CGUGGuGGc -5'
10380 3' -60.5 NC_002687.1 + 296981 0.69 0.734057
Target:  5'- cGUCUCGAcucccuccacauGCUguucaUCCGCCuGCugCACCGg -3'
miRNA:   3'- -UAGGGCU------------UGG-----AGGCGGuCGugGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 173903 0.69 0.734057
Target:  5'- aGUCCCaccuccGCCUCCGCCuccacuuGCGCCuCCa -3'
miRNA:   3'- -UAGGGcu----UGGAGGCGGu------CGUGGuGGc -5'
10380 3' -60.5 NC_002687.1 + 72922 0.69 0.743096
Target:  5'- uGUgCCGAcGCCgccgCCGCCGacaCACCGCCGa -3'
miRNA:   3'- -UAgGGCU-UGGa---GGCGGUc--GUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 156263 0.69 0.752052
Target:  5'- cAUCCUGAACagCUCCGCCGaaACCACa- -3'
miRNA:   3'- -UAGGGCUUG--GAGGCGGUcgUGGUGgc -5'
10380 3' -60.5 NC_002687.1 + 173678 0.69 0.755609
Target:  5'- uUUCCGAGCCUgcucuaccucugcugUCGCCcGCGCUAUCGa -3'
miRNA:   3'- uAGGGCUUGGA---------------GGCGGuCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 331886 0.68 0.760917
Target:  5'- gAUgCCGcaaucGCCUCCacGCCcaAGCGCCGCCGc -3'
miRNA:   3'- -UAgGGCu----UGGAGG--CGG--UCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 256264 0.68 0.778346
Target:  5'- cAUCgUGuGCUUCCGCgggagcgaUAGCGCCGCCGa -3'
miRNA:   3'- -UAGgGCuUGGAGGCG--------GUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 85727 0.68 0.786895
Target:  5'- -cCCCGcuGGCC-CCGCUGGCcCCGCUGg -3'
miRNA:   3'- uaGGGC--UUGGaGGCGGUCGuGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 315659 0.68 0.786895
Target:  5'- cGUCCCc-ACCgUCCccaCCGGCACCAUCGg -3'
miRNA:   3'- -UAGGGcuUGG-AGGc--GGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 11903 0.68 0.786895
Target:  5'- -aUCCGcugcuGAUCUCCGCUGGUACCGCuCGu -3'
miRNA:   3'- uaGGGC-----UUGGAGGCGGUCGUGGUG-GC- -5'
10380 3' -60.5 NC_002687.1 + 75046 0.68 0.795325
Target:  5'- aAUCCCGAACauagCUCCuCgGGCuccuCCGCCGa -3'
miRNA:   3'- -UAGGGCUUG----GAGGcGgUCGu---GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 85699 0.68 0.795325
Target:  5'- -gCCCGucuGGCC-CCGCUGGCcCCACUGg -3'
miRNA:   3'- uaGGGC---UUGGaGGCGGUCGuGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 86854 0.68 0.803629
Target:  5'- gAUCCC--GCCUCC-CCcGCACCAgCGa -3'
miRNA:   3'- -UAGGGcuUGGAGGcGGuCGUGGUgGC- -5'
10380 3' -60.5 NC_002687.1 + 307278 0.67 0.81983
Target:  5'- -gCCCGuGCCagcaccaccaCCGCCAcCGCCGCCGa -3'
miRNA:   3'- uaGGGCuUGGa---------GGCGGUcGUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.