Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10380 | 3' | -60.5 | NC_002687.1 | + | 225270 | 0.67 | 0.827714 |
Target: 5'- uGUCUCcu-CCUCCGCCAcCacauGCCACCGg -3' miRNA: 3'- -UAGGGcuuGGAGGCGGUcG----UGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 69407 | 0.67 | 0.827714 |
Target: 5'- --gCCGAcACCaCCGCCAcCGCCGCCa -3' miRNA: 3'- uagGGCU-UGGaGGCGGUcGUGGUGGc -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 227176 | 0.67 | 0.827714 |
Target: 5'- -cUCCGccACCgccaCCGCCAcCGCCACCGg -3' miRNA: 3'- uaGGGCu-UGGa---GGCGGUcGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 224807 | 0.67 | 0.827714 |
Target: 5'- cUgCCGcuGCCgCCGCCAcCACCACCa -3' miRNA: 3'- uAgGGCu-UGGaGGCGGUcGUGGUGGc -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 85353 | 0.67 | 0.81983 |
Target: 5'- gGUCCCGucggUCCgGCgGGUGCCACCGg -3' miRNA: 3'- -UAGGGCuuggAGG-CGgUCGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 307278 | 0.67 | 0.81983 |
Target: 5'- -gCCCGuGCCagcaccaccaCCGCCAcCGCCGCCGa -3' miRNA: 3'- uaGGGCuUGGa---------GGCGGUcGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 86854 | 0.68 | 0.803629 |
Target: 5'- gAUCCC--GCCUCC-CCcGCACCAgCGa -3' miRNA: 3'- -UAGGGcuUGGAGGcGGuCGUGGUgGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 75046 | 0.68 | 0.795325 |
Target: 5'- aAUCCCGAACauagCUCCuCgGGCuccuCCGCCGa -3' miRNA: 3'- -UAGGGCUUG----GAGGcGgUCGu---GGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 85699 | 0.68 | 0.795325 |
Target: 5'- -gCCCGucuGGCC-CCGCUGGCcCCACUGg -3' miRNA: 3'- uaGGGC---UUGGaGGCGGUCGuGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 11903 | 0.68 | 0.786895 |
Target: 5'- -aUCCGcugcuGAUCUCCGCUGGUACCGCuCGu -3' miRNA: 3'- uaGGGC-----UUGGAGGCGGUCGUGGUG-GC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 85727 | 0.68 | 0.786895 |
Target: 5'- -cCCCGcuGGCC-CCGCUGGCcCCGCUGg -3' miRNA: 3'- uaGGGC--UUGGaGGCGGUCGuGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 315659 | 0.68 | 0.786895 |
Target: 5'- cGUCCCc-ACCgUCCccaCCGGCACCAUCGg -3' miRNA: 3'- -UAGGGcuUGG-AGGc--GGUCGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 256264 | 0.68 | 0.778346 |
Target: 5'- cAUCgUGuGCUUCCGCgggagcgaUAGCGCCGCCGa -3' miRNA: 3'- -UAGgGCuUGGAGGCG--------GUCGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 331886 | 0.68 | 0.760917 |
Target: 5'- gAUgCCGcaaucGCCUCCacGCCcaAGCGCCGCCGc -3' miRNA: 3'- -UAgGGCu----UGGAGG--CGG--UCGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 173678 | 0.69 | 0.755609 |
Target: 5'- uUUCCGAGCCUgcucuaccucugcugUCGCCcGCGCUAUCGa -3' miRNA: 3'- uAGGGCUUGGA---------------GGCGGuCGUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 156263 | 0.69 | 0.752052 |
Target: 5'- cAUCCUGAACagCUCCGCCGaaACCACa- -3' miRNA: 3'- -UAGGGCUUG--GAGGCGGUcgUGGUGgc -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 72922 | 0.69 | 0.743096 |
Target: 5'- uGUgCCGAcGCCgccgCCGCCGacaCACCGCCGa -3' miRNA: 3'- -UAgGGCU-UGGa---GGCGGUc--GUGGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 173855 | 0.69 | 0.734057 |
Target: 5'- aGUCCCaccuccGCCUCCGCCuccacuuGCGCCuCCa -3' miRNA: 3'- -UAGGGcu----UGGAGGCGGu------CGUGGuGGc -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 296981 | 0.69 | 0.734057 |
Target: 5'- cGUCUCGAcucccuccacauGCUguucaUCCGCCuGCugCACCGg -3' miRNA: 3'- -UAGGGCU------------UGG-----AGGCGGuCGugGUGGC- -5' |
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10380 | 3' | -60.5 | NC_002687.1 | + | 173903 | 0.69 | 0.734057 |
Target: 5'- aGUCCCaccuccGCCUCCGCCuccacuuGCGCCuCCa -3' miRNA: 3'- -UAGGGcu----UGGAGGCGGu------CGUGGuGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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