miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 3' -60.5 NC_002687.1 + 279266 0.69 0.724942
Target:  5'- -aCCaCGAGCagcagguggUGCCGGCACCACCGg -3'
miRNA:   3'- uaGG-GCUUGgag------GCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 309214 0.69 0.715759
Target:  5'- cGUCCaCGuauCCaUUCGCCaucAGCGCCACCGu -3'
miRNA:   3'- -UAGG-GCuu-GG-AGGCGG---UCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 97773 0.69 0.715759
Target:  5'- uUCUCGuuGCUggcaCCGCUGGCACCGCUGg -3'
miRNA:   3'- uAGGGCu-UGGa---GGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 164516 0.7 0.697216
Target:  5'- cUUUCGucGCCUCCGCCAGCACacgACuCGg -3'
miRNA:   3'- uAGGGCu-UGGAGGCGGUCGUGg--UG-GC- -5'
10380 3' -60.5 NC_002687.1 + 2861 0.7 0.696283
Target:  5'- gGUCUCGAgggcgccgauggcGCCUUCGUCGGCACaGCCa -3'
miRNA:   3'- -UAGGGCU-------------UGGAGGCGGUCGUGgUGGc -5'
10380 3' -60.5 NC_002687.1 + 255708 0.7 0.669067
Target:  5'- uUCCCGGuuuUCUCUgGCCuGCGCCAUCGu -3'
miRNA:   3'- uAGGGCUu--GGAGG-CGGuCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 279091 0.7 0.659624
Target:  5'- --aCCaGGCgCUCCcCCGGCACCACCGa -3'
miRNA:   3'- uagGGcUUG-GAGGcGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 282432 0.7 0.650161
Target:  5'- -aCCCGAGCCgCCGCUgcugccacuacGGCcccuGCCGCCGc -3'
miRNA:   3'- uaGGGCUUGGaGGCGG-----------UCG----UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 240382 0.71 0.640686
Target:  5'- gGUCaCCGAaaaACCUuuGCCAGCGCaCGCa- -3'
miRNA:   3'- -UAG-GGCU---UGGAggCGGUCGUG-GUGgc -5'
10380 3' -60.5 NC_002687.1 + 173942 0.71 0.640686
Target:  5'- -cCCCGccuccGCCUCCGCCuccGCcCCACCu -3'
miRNA:   3'- uaGGGCu----UGGAGGCGGu--CGuGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 225223 0.71 0.631206
Target:  5'- cGUgCCG-ACCg-UGCCGGCGCCGCCGc -3'
miRNA:   3'- -UAgGGCuUGGagGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 145917 0.71 0.612253
Target:  5'- cUCCaucACgUCCGCCAGCGCCAaguCCGa -3'
miRNA:   3'- uAGGgcuUGgAGGCGGUCGUGGU---GGC- -5'
10380 3' -60.5 NC_002687.1 + 174736 0.71 0.612253
Target:  5'- -gCCgGAACCgccggaaCCGCCGGaACCGCCGg -3'
miRNA:   3'- uaGGgCUUGGa------GGCGGUCgUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 298787 0.71 0.612253
Target:  5'- -cCCCGAcuCCUCaCGCCAuuuGCGCCACgGa -3'
miRNA:   3'- uaGGGCUu-GGAG-GCGGU---CGUGGUGgC- -5'
10380 3' -60.5 NC_002687.1 + 81492 0.71 0.602793
Target:  5'- uUCCCGuugUCgCCGUCGGCACCAUCGu -3'
miRNA:   3'- uAGGGCuu-GGaGGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 311080 0.72 0.574546
Target:  5'- --aCUGaAAUCggCCGCCAGCGCCGCCa -3'
miRNA:   3'- uagGGC-UUGGa-GGCGGUCGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 225965 0.73 0.528234
Target:  5'- cGUCCUccacuCCUCCGCCgucuccAGCACCACCc -3'
miRNA:   3'- -UAGGGcuu--GGAGGCGG------UCGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 224521 0.73 0.510088
Target:  5'- -cCCCGccACCgccaCCGCCAGCGCCAgCGc -3'
miRNA:   3'- uaGGGCu-UGGa---GGCGGUCGUGGUgGC- -5'
10380 3' -60.5 NC_002687.1 + 224484 0.73 0.510088
Target:  5'- --aCCGccaccGCCagCGCCAGCGCCACCGc -3'
miRNA:   3'- uagGGCu----UGGagGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 238648 0.73 0.498433
Target:  5'- -cCCCGAACCggaccaugacUCCGCCAuGCggaucguucgguggGCCACCGa -3'
miRNA:   3'- uaGGGCUUGG----------AGGCGGU-CG--------------UGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.