miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 3' -60.5 NC_002687.1 + 2861 0.7 0.696283
Target:  5'- gGUCUCGAgggcgccgauggcGCCUUCGUCGGCACaGCCa -3'
miRNA:   3'- -UAGGGCU-------------UGGAGGCGGUCGUGgUGGc -5'
10380 3' -60.5 NC_002687.1 + 11903 0.68 0.786895
Target:  5'- -aUCCGcugcuGAUCUCCGCUGGUACCGCuCGu -3'
miRNA:   3'- uaGGGC-----UUGGAGGCGGUCGUGGUG-GC- -5'
10380 3' -60.5 NC_002687.1 + 41999 0.67 0.827714
Target:  5'- cGUCCgCGAA-CUCCGCgAGCcACCACa- -3'
miRNA:   3'- -UAGG-GCUUgGAGGCGgUCG-UGGUGgc -5'
10380 3' -60.5 NC_002687.1 + 55840 0.67 0.842268
Target:  5'- -cCCCGAuccauaccCCUCCauguauuuuucauGCCAGUAgCCACCGc -3'
miRNA:   3'- uaGGGCUu-------GGAGG-------------CGGUCGU-GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 62402 0.79 0.257003
Target:  5'- -cCCUGGACCUCgguuuCGCCAGCACCAUCu -3'
miRNA:   3'- uaGGGCUUGGAG-----GCGGUCGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 69407 0.67 0.827714
Target:  5'- --gCCGAcACCaCCGCCAcCGCCGCCa -3'
miRNA:   3'- uagGGCU-UGGaGGCGGUcGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 72922 0.69 0.743096
Target:  5'- uGUgCCGAcGCCgccgCCGCCGacaCACCGCCGa -3'
miRNA:   3'- -UAgGGCU-UGGa---GGCGGUc--GUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 75046 0.68 0.795325
Target:  5'- aAUCCCGAACauagCUCCuCgGGCuccuCCGCCGa -3'
miRNA:   3'- -UAGGGCUUG----GAGGcGgUCGu---GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 81492 0.71 0.602793
Target:  5'- uUCCCGuugUCgCCGUCGGCACCAUCGu -3'
miRNA:   3'- uAGGGCuu-GGaGGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 85353 0.67 0.81983
Target:  5'- gGUCCCGucggUCCgGCgGGUGCCACCGg -3'
miRNA:   3'- -UAGGGCuuggAGG-CGgUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 85506 0.66 0.857665
Target:  5'- cUCCCuGGACCcgcuggucCCGCCGGCGCgGCa- -3'
miRNA:   3'- uAGGG-CUUGGa-------GGCGGUCGUGgUGgc -5'
10380 3' -60.5 NC_002687.1 + 85699 0.68 0.795325
Target:  5'- -gCCCGucuGGCC-CCGCUGGCcCCACUGg -3'
miRNA:   3'- uaGGGC---UUGGaGGCGGUCGuGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 85727 0.68 0.786895
Target:  5'- -cCCCGcuGGCC-CCGCUGGCcCCGCUGg -3'
miRNA:   3'- uaGGGC--UUGGaGGCGGUCGuGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 86854 0.68 0.803629
Target:  5'- gAUCCC--GCCUCC-CCcGCACCAgCGa -3'
miRNA:   3'- -UAGGGcuUGGAGGcGGuCGUGGUgGC- -5'
10380 3' -60.5 NC_002687.1 + 97773 0.69 0.715759
Target:  5'- uUCUCGuuGCUggcaCCGCUGGCACCGCUGg -3'
miRNA:   3'- uAGGGCu-UGGa---GGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 130351 0.66 0.891141
Target:  5'- aGUCUUucGCCaCCGCCAcCGCCACCa -3'
miRNA:   3'- -UAGGGcuUGGaGGCGGUcGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 145761 0.77 0.312447
Target:  5'- gAUCCCGAucaacacgGCCUCCGCCucGGCgaugGCCGCCu -3'
miRNA:   3'- -UAGGGCU--------UGGAGGCGG--UCG----UGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 145917 0.71 0.612253
Target:  5'- cUCCaucACgUCCGCCAGCGCCAaguCCGa -3'
miRNA:   3'- uAGGgcuUGgAGGCGGUCGUGGU---GGC- -5'
10380 3' -60.5 NC_002687.1 + 156263 0.69 0.752052
Target:  5'- cAUCCUGAACagCUCCGCCGaaACCACa- -3'
miRNA:   3'- -UAGGGCUUG--GAGGCGGUcgUGGUGgc -5'
10380 3' -60.5 NC_002687.1 + 164516 0.7 0.697216
Target:  5'- cUUUCGucGCCUCCGCCAGCACacgACuCGg -3'
miRNA:   3'- uAGGGCu-UGGAGGCGGUCGUGg--UG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.