miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 3' -60.5 NC_002687.1 + 173678 0.69 0.755609
Target:  5'- uUUCCGAGCCUgcucuaccucugcugUCGCCcGCGCUAUCGa -3'
miRNA:   3'- uAGGGCUUGGA---------------GGCGGuCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 173855 0.69 0.734057
Target:  5'- aGUCCCaccuccGCCUCCGCCuccacuuGCGCCuCCa -3'
miRNA:   3'- -UAGGGcu----UGGAGGCGGu------CGUGGuGGc -5'
10380 3' -60.5 NC_002687.1 + 173903 0.69 0.734057
Target:  5'- aGUCCCaccuccGCCUCCGCCuccacuuGCGCCuCCa -3'
miRNA:   3'- -UAGGGcu----UGGAGGCGGu------CGUGGuGGc -5'
10380 3' -60.5 NC_002687.1 + 173942 0.71 0.640686
Target:  5'- -cCCCGccuccGCCUCCGCCuccGCcCCACCu -3'
miRNA:   3'- uaGGGCu----UGGAGGCGGu--CGuGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 173968 0.66 0.871612
Target:  5'- -gCCCccGCCUCCGCCucCGCCuCCGc -3'
miRNA:   3'- uaGGGcuUGGAGGCGGucGUGGuGGC- -5'
10380 3' -60.5 NC_002687.1 + 174736 0.71 0.612253
Target:  5'- -gCCgGAACCgccggaaCCGCCGGaACCGCCGg -3'
miRNA:   3'- uaGGgCUUGGa------GGCGGUCgUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 177867 0.66 0.871612
Target:  5'- gGUgCCGGugGCUUuCCaUCAGCACCACCGc -3'
miRNA:   3'- -UAgGGCU--UGGA-GGcGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 215648 0.66 0.870931
Target:  5'- cGUCgCCGAGCCUaucgccgUCGCCgAGCcuAUCGCCGu -3'
miRNA:   3'- -UAG-GGCUUGGA-------GGCGG-UCG--UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 223826 0.94 0.026002
Target:  5'- cAUCCCGAA-CUCCGCCAGCACCACCGu -3'
miRNA:   3'- -UAGGGCUUgGAGGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 224450 0.97 0.015611
Target:  5'- cGUCCCGAACgUCCGCCAGCACCACCa -3'
miRNA:   3'- -UAGGGCUUGgAGGCGGUCGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 224484 0.73 0.510088
Target:  5'- --aCCGccaccGCCagCGCCAGCGCCACCGc -3'
miRNA:   3'- uagGGCu----UGGagGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 224521 0.73 0.510088
Target:  5'- -cCCCGccACCgccaCCGCCAGCGCCAgCGc -3'
miRNA:   3'- uaGGGCu-UGGa---GGCGGUCGUGGUgGC- -5'
10380 3' -60.5 NC_002687.1 + 224807 0.67 0.827714
Target:  5'- cUgCCGcuGCCgCCGCCAcCACCACCa -3'
miRNA:   3'- uAgGGCu-UGGaGGCGGUcGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 225223 0.71 0.631206
Target:  5'- cGUgCCG-ACCg-UGCCGGCGCCGCCGc -3'
miRNA:   3'- -UAgGGCuUGGagGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 225270 0.67 0.827714
Target:  5'- uGUCUCcu-CCUCCGCCAcCacauGCCACCGg -3'
miRNA:   3'- -UAGGGcuuGGAGGCGGUcG----UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 225965 0.73 0.528234
Target:  5'- cGUCCUccacuCCUCCGCCgucuccAGCACCACCc -3'
miRNA:   3'- -UAGGGcuu--GGAGGCGG------UCGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 227176 0.67 0.827714
Target:  5'- -cUCCGccACCgccaCCGCCAcCGCCACCGg -3'
miRNA:   3'- uaGGGCu-UGGa---GGCGGUcGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 238648 0.73 0.498433
Target:  5'- -cCCCGAACCggaccaugacUCCGCCAuGCggaucguucgguggGCCACCGa -3'
miRNA:   3'- uaGGGCUUGG----------AGGCGGU-CG--------------UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 240382 0.71 0.640686
Target:  5'- gGUCaCCGAaaaACCUuuGCCAGCGCaCGCa- -3'
miRNA:   3'- -UAG-GGCU---UGGAggCGGUCGUG-GUGgc -5'
10380 3' -60.5 NC_002687.1 + 241502 0.66 0.864728
Target:  5'- uGUCCUGuGCCgaaaucacgCCGCCAccGUugGCCACCGc -3'
miRNA:   3'- -UAGGGCuUGGa--------GGCGGU--CG--UGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.