miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 3' -60.5 NC_002687.1 + 241502 0.66 0.864728
Target:  5'- uGUCCUGuGCCgaaaucacgCCGCCAccGUugGCCACCGc -3'
miRNA:   3'- -UAGGGCuUGGa--------GGCGGU--CG--UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 75046 0.68 0.795325
Target:  5'- aAUCCCGAACauagCUCCuCgGGCuccuCCGCCGa -3'
miRNA:   3'- -UAGGGCUUG----GAGGcGgUCGu---GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 2861 0.7 0.696283
Target:  5'- gGUCUCGAgggcgccgauggcGCCUUCGUCGGCACaGCCa -3'
miRNA:   3'- -UAGGGCU-------------UGGAGGCGGUCGUGgUGGc -5'
10380 3' -60.5 NC_002687.1 + 41999 0.67 0.827714
Target:  5'- cGUCCgCGAA-CUCCGCgAGCcACCACa- -3'
miRNA:   3'- -UAGG-GCUUgGAGGCGgUCG-UGGUGgc -5'
10380 3' -60.5 NC_002687.1 + 302922 0.66 0.884822
Target:  5'- -cCCCGAGCgguuggaaUCCaCCAcGCACCGCCc -3'
miRNA:   3'- uaGGGCUUGg-------AGGcGGU-CGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 243677 0.66 0.857665
Target:  5'- uUCaaGAACUaCCaGCCucgcGGCACCACCGa -3'
miRNA:   3'- uAGggCUUGGaGG-CGG----UCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 174736 0.71 0.612253
Target:  5'- -gCCgGAACCgccggaaCCGCCGGaACCGCCGg -3'
miRNA:   3'- uaGGgCUUGGa------GGCGGUCgUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 145917 0.71 0.612253
Target:  5'- cUCCaucACgUCCGCCAGCGCCAaguCCGa -3'
miRNA:   3'- uAGGgcuUGgAGGCGGUCGUGGU---GGC- -5'
10380 3' -60.5 NC_002687.1 + 97773 0.69 0.715759
Target:  5'- uUCUCGuuGCUggcaCCGCUGGCACCGCUGg -3'
miRNA:   3'- uAGGGCu-UGGa---GGCGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 86854 0.68 0.803629
Target:  5'- gAUCCC--GCCUCC-CCcGCACCAgCGa -3'
miRNA:   3'- -UAGGGcuUGGAGGcGGuCGUGGUgGC- -5'
10380 3' -60.5 NC_002687.1 + 177867 0.66 0.871612
Target:  5'- gGUgCCGGugGCUUuCCaUCAGCACCACCGc -3'
miRNA:   3'- -UAgGGCU--UGGA-GGcGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 298787 0.71 0.612253
Target:  5'- -cCCCGAcuCCUCaCGCCAuuuGCGCCACgGa -3'
miRNA:   3'- uaGGGCUu-GGAG-GCGGU---CGUGGUGgC- -5'
10380 3' -60.5 NC_002687.1 + 227176 0.67 0.827714
Target:  5'- -cUCCGccACCgccaCCGCCAcCGCCACCGg -3'
miRNA:   3'- uaGGGCu-UGGa---GGCGGUcGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 69407 0.67 0.827714
Target:  5'- --gCCGAcACCaCCGCCAcCGCCGCCa -3'
miRNA:   3'- uagGGCU-UGGaGGCGGUcGUGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 55840 0.67 0.842268
Target:  5'- -cCCCGAuccauaccCCUCCauguauuuuucauGCCAGUAgCCACCGc -3'
miRNA:   3'- uaGGGCUu-------GGAGG-------------CGGUCGU-GGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 279091 0.7 0.659624
Target:  5'- --aCCaGGCgCUCCcCCGGCACCACCGa -3'
miRNA:   3'- uagGGcUUG-GAGGcGGUCGUGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 282432 0.7 0.650161
Target:  5'- -aCCCGAGCCgCCGCUgcugccacuacGGCcccuGCCGCCGc -3'
miRNA:   3'- uaGGGCUUGGaGGCGG-----------UCG----UGGUGGC- -5'
10380 3' -60.5 NC_002687.1 + 173942 0.71 0.640686
Target:  5'- -cCCCGccuccGCCUCCGCCuccGCcCCACCu -3'
miRNA:   3'- uaGGGCu----UGGAGGCGGu--CGuGGUGGc -5'
10380 3' -60.5 NC_002687.1 + 240382 0.71 0.640686
Target:  5'- gGUCaCCGAaaaACCUuuGCCAGCGCaCGCa- -3'
miRNA:   3'- -UAG-GGCU---UGGAggCGGUCGUG-GUGgc -5'
10380 3' -60.5 NC_002687.1 + 225223 0.71 0.631206
Target:  5'- cGUgCCG-ACCg-UGCCGGCGCCGCCGc -3'
miRNA:   3'- -UAgGGCuUGGagGCGGUCGUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.