miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10380 5' -55.7 NC_002687.1 + 48133 0.66 0.985879
Target:  5'- gCCUCCgguGGCGCAGGUGugccGGccAGCgaUCa -3'
miRNA:   3'- gGGAGG---UCGCGUCCGCu---CC--UUGaaAG- -5'
10380 5' -55.7 NC_002687.1 + 122118 0.66 0.9824
Target:  5'- aCCUCCAGaucaCAGGCGAGau-CUUUg -3'
miRNA:   3'- gGGAGGUCgc--GUCCGCUCcuuGAAAg -5'
10380 5' -55.7 NC_002687.1 + 118122 0.66 0.981239
Target:  5'- aCCC-CCGGCGUucagugaacgggcuaGGGCGuuGGAACa--- -3'
miRNA:   3'- -GGGaGGUCGCG---------------UCCGCu-CCUUGaaag -5'
10380 5' -55.7 NC_002687.1 + 278942 0.66 0.980435
Target:  5'- aCCUUuaucggugguggCAGCGCAGG-GGGGGGCa--- -3'
miRNA:   3'- gGGAG------------GUCGCGUCCgCUCCUUGaaag -5'
10380 5' -55.7 NC_002687.1 + 103540 0.66 0.978311
Target:  5'- aCUCUCCGGgagacagaGCGGGCGAcGGGAUg--- -3'
miRNA:   3'- -GGGAGGUCg-------CGUCCGCU-CCUUGaaag -5'
10380 5' -55.7 NC_002687.1 + 298884 0.66 0.976022
Target:  5'- gCCCUCgGGCGC-GGCcaAGGAAU--UCa -3'
miRNA:   3'- -GGGAGgUCGCGuCCGc-UCCUUGaaAG- -5'
10380 5' -55.7 NC_002687.1 + 204529 0.66 0.976022
Target:  5'- cCCCUCCAGCGCGGuguuCGAuGAuGCguagUCg -3'
miRNA:   3'- -GGGAGGUCGCGUCc---GCUcCU-UGaa--AG- -5'
10380 5' -55.7 NC_002687.1 + 316881 0.66 0.976022
Target:  5'- uUCCUCCAGCGC--GCGGGcAGCUc-- -3'
miRNA:   3'- -GGGAGGUCGCGucCGCUCcUUGAaag -5'
10380 5' -55.7 NC_002687.1 + 59077 0.66 0.976022
Target:  5'- cUCCU-CAGUGCAGGCGu-GAGCUg-- -3'
miRNA:   3'- -GGGAgGUCGCGUCCGCucCUUGAaag -5'
10380 5' -55.7 NC_002687.1 + 96944 0.67 0.970921
Target:  5'- --aUCCGGCGCAGcgguGCGGGGAccguGCUUc- -3'
miRNA:   3'- gggAGGUCGCGUC----CGCUCCU----UGAAag -5'
10380 5' -55.7 NC_002687.1 + 266478 0.67 0.970921
Target:  5'- cCUCUCCAGCGagaaGGGUGAaaGcGAGCUg-- -3'
miRNA:   3'- -GGGAGGUCGCg---UCCGCU--C-CUUGAaag -5'
10380 5' -55.7 NC_002687.1 + 298419 0.67 0.961877
Target:  5'- gCCUCCguGGCGCAaauGGCGugaggagucgGGGAAUgcgUUCa -3'
miRNA:   3'- gGGAGG--UCGCGU---CCGC----------UCCUUGa--AAG- -5'
10380 5' -55.7 NC_002687.1 + 184071 0.68 0.951047
Target:  5'- -aCUCCAGCuGCAGGCGGcGGuagg-UCa -3'
miRNA:   3'- ggGAGGUCG-CGUCCGCU-CCuugaaAG- -5'
10380 5' -55.7 NC_002687.1 + 75419 0.69 0.923673
Target:  5'- gCUUUCGGCGgAGGagccCGAGGAGCUaugUUCg -3'
miRNA:   3'- gGGAGGUCGCgUCC----GCUCCUUGA---AAG- -5'
10380 5' -55.7 NC_002687.1 + 332835 0.7 0.90706
Target:  5'- gCCCUCCAGUGCuuuGGUGAGcauggugucGGACa--- -3'
miRNA:   3'- -GGGAGGUCGCGu--CCGCUC---------CUUGaaag -5'
10380 5' -55.7 NC_002687.1 + 330036 0.7 0.90706
Target:  5'- gUCUCCuGUGCAGGCGcuuGGGAAgUUg- -3'
miRNA:   3'- gGGAGGuCGCGUCCGC---UCCUUgAAag -5'
10380 5' -55.7 NC_002687.1 + 57520 0.7 0.894913
Target:  5'- uCCCUUacGCGaccCGGGCGAGGGACagUCa -3'
miRNA:   3'- -GGGAGguCGC---GUCCGCUCCUUGaaAG- -5'
10380 5' -55.7 NC_002687.1 + 280273 0.7 0.888525
Target:  5'- aCUUUCCAGagcgaGCGGuGCGGauGGGGCUUUCa -3'
miRNA:   3'- -GGGAGGUCg----CGUC-CGCU--CCUUGAAAG- -5'
10380 5' -55.7 NC_002687.1 + 214757 0.7 0.881931
Target:  5'- aCCaCCGGCGCaAGuGCGAGGAagAgUUUCa -3'
miRNA:   3'- gGGaGGUCGCG-UC-CGCUCCU--UgAAAG- -5'
10380 5' -55.7 NC_002687.1 + 25815 0.71 0.868142
Target:  5'- aCCCUCCGGCGCAacGGCGu---GCUg-- -3'
miRNA:   3'- -GGGAGGUCGCGU--CCGCuccuUGAaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.