miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 212326 0.66 0.989888
Target:  5'- uGGCAuccUCGGCGUCuucgGGCucgccaccGUCGacaGCGGUGGu -3'
miRNA:   3'- -CCGU---AGCCGUAG----CCG--------UAGC---CGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224862 0.66 0.987175
Target:  5'- cGCggCGGCGcCGGCAcggUCGGCAc--- -3'
miRNA:   3'- cCGuaGCCGUaGCCGU---AGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 87781 0.66 0.986724
Target:  5'- uGCAcCGGCAUCuGGUAgccgggcugcugacUCGGCcucuGGUAGa -3'
miRNA:   3'- cCGUaGCCGUAG-CCGU--------------AGCCG----UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 315990 0.66 0.98626
Target:  5'- cGGCAUagCGGUGuccUCGGCAgucguuccgaaugcuUCGGguGUAu -3'
miRNA:   3'- -CCGUA--GCCGU---AGCCGU---------------AGCCguCAUc -5'
10381 3' -55.3 NC_002687.1 + 249270 0.66 0.985945
Target:  5'- cGGCAUCGGCAagacaaucaaggcUCGGacccuuuuugcgaaGGUGGUGGa -3'
miRNA:   3'- -CCGUAGCCGU-------------AGCCguag----------CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 251636 0.66 0.985623
Target:  5'- aGCAUCGGCAUCG-CGUCGaCuGUu- -3'
miRNA:   3'- cCGUAGCCGUAGCcGUAGCcGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 24060 0.66 0.985623
Target:  5'- gGGCGUCGGCGgugaGGgGggGGguGUGc -3'
miRNA:   3'- -CCGUAGCCGUag--CCgUagCCguCAUc -5'
10381 3' -55.3 NC_002687.1 + 263075 0.66 0.983932
Target:  5'- uGGUAgauugUGGUcUCGGgAUCGGCGGg-- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCgUAGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 301014 0.66 0.983932
Target:  5'- aGCuucUCGGCGUCGGaua-GGCGGUc- -3'
miRNA:   3'- cCGu--AGCCGUAGCCguagCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 307710 0.66 0.982095
Target:  5'- aGCGaUGGUGaCGGCAUCaacgaaGGCAGUGGu -3'
miRNA:   3'- cCGUaGCCGUaGCCGUAG------CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 261320 0.66 0.982095
Target:  5'- gGGCggCGGCAaCGGCAU-GGCGaaGGg -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUAgCCGUcaUC- -5'
10381 3' -55.3 NC_002687.1 + 215706 0.67 0.980104
Target:  5'- uGGCAUCGuCGUCGGUggCGGUcGUc- -3'
miRNA:   3'- -CCGUAGCcGUAGCCGuaGCCGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 249108 0.67 0.980104
Target:  5'- cGGUAcCGGCGUUGaagaGCGUCGGU-GUGGc -3'
miRNA:   3'- -CCGUaGCCGUAGC----CGUAGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 215288 0.67 0.975634
Target:  5'- cGGCGaCGGCGauaggcUCGGCGaCGGCgacAGUGa -3'
miRNA:   3'- -CCGUaGCCGU------AGCCGUaGCCG---UCAUc -5'
10381 3' -55.3 NC_002687.1 + 103435 0.67 0.973142
Target:  5'- cGGCGUCGaCAUCGGCuuucuuGUUGGCcGUc- -3'
miRNA:   3'- -CCGUAGCcGUAGCCG------UAGCCGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 71673 0.67 0.970471
Target:  5'- gGGCGUCGGgaagGUCGGCgauguuuggGUCaGCGGUGa -3'
miRNA:   3'- -CCGUAGCCg---UAGCCG---------UAGcCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 164577 0.67 0.970471
Target:  5'- aGGCAgacacCGGC-UCGGCAcCGGCGa--- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 10365 0.67 0.970471
Target:  5'- aGGCGgagUGGCugCGGCGaCGGgGGUGGa -3'
miRNA:   3'- -CCGUa--GCCGuaGCCGUaGCCgUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 175101 0.67 0.967614
Target:  5'- cGGCGguucCGGCGguucCGGCGguucCGGCGGUu- -3'
miRNA:   3'- -CCGUa---GCCGUa---GCCGUa---GCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 307622 0.68 0.961326
Target:  5'- uGGCAcgggCGGCggCGGUGcUGGUGGUGGa -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGUaGCCGUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.