miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 215979 0.68 0.955721
Target:  5'- aGGuCGUCGGUcugacucggggugaaAUUGGCAUCGGguGcuUGGu -3'
miRNA:   3'- -CC-GUAGCCG---------------UAGCCGUAGCCguC--AUC- -5'
10381 3' -55.3 NC_002687.1 + 307622 0.68 0.961326
Target:  5'- uGGCAcgggCGGCggCGGUGcUGGUGGUGGa -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGUaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 130724 0.68 0.950384
Target:  5'- uGGCGguggUGGUggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 200774 0.68 0.957884
Target:  5'- cGCA-CGGCAUCGGgaCAUCcGGCGGc-- -3'
miRNA:   3'- cCGUaGCCGUAGCC--GUAG-CCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 78104 0.69 0.942043
Target:  5'- cGGCcgUGGCggCGGCGUcugaaaCGGCAGc-- -3'
miRNA:   3'- -CCGuaGCCGuaGCCGUA------GCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 252081 0.69 0.932842
Target:  5'- aGCuUUGGUuuuGUCGGCGaagaacUUGGCAGUGGa -3'
miRNA:   3'- cCGuAGCCG---UAGCCGU------AGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 145480 0.69 0.937551
Target:  5'- cGGCGcgcgccUCGGCGagcagaUCGGCAaguucgcguacUCGGCAGa-- -3'
miRNA:   3'- -CCGU------AGCCGU------AGCCGU-----------AGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 316062 0.69 0.942043
Target:  5'- cGGCAggauUCGGUG-CGGC--UGGCGGUGGu -3'
miRNA:   3'- -CCGU----AGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 24436 0.69 0.94632
Target:  5'- gGGCuuccugCGGCAgUCGGagugcaGGCAGUGGg -3'
miRNA:   3'- -CCGua----GCCGU-AGCCguag--CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 293372 0.69 0.932842
Target:  5'- cGGgAUCGGC--CGGCAgugucaUCGGCAGa-- -3'
miRNA:   3'- -CCgUAGCCGuaGCCGU------AGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 11410 0.69 0.942043
Target:  5'- cGGUAgcggUGGCAgcagCGGCAgCaGCAGUAGc -3'
miRNA:   3'- -CCGUa---GCCGUa---GCCGUaGcCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 305163 0.69 0.94632
Target:  5'- uGGCGUCGGUugggCGGaCGuacuUCGGC-GUGGa -3'
miRNA:   3'- -CCGUAGCCGua--GCC-GU----AGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 304531 0.69 0.927915
Target:  5'- cGGgGUCGGgGUCGGgGUCGG-AGUcGGg -3'
miRNA:   3'- -CCgUAGCCgUAGCCgUAGCCgUCA-UC- -5'
10381 3' -55.3 NC_002687.1 + 154484 0.69 0.932842
Target:  5'- uGGCuAUUGGCAacugCGaCAUCGGCAGggAGg -3'
miRNA:   3'- -CCG-UAGCCGUa---GCcGUAGCCGUCa-UC- -5'
10381 3' -55.3 NC_002687.1 + 226651 0.7 0.900025
Target:  5'- uGGCAUUGGCGccCuGCAUCGGCGaggaaggaugcGUGGa -3'
miRNA:   3'- -CCGUAGCCGUa-GcCGUAGCCGU-----------CAUC- -5'
10381 3' -55.3 NC_002687.1 + 251691 0.7 0.906034
Target:  5'- aGGCGUUGGCGUCGGUGUCuaCgAGUGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGccG-UCAUc -5'
10381 3' -55.3 NC_002687.1 + 226747 0.7 0.906034
Target:  5'- gGGUucucUCGGCAgCGGCggUGGUGGUAGc -3'
miRNA:   3'- -CCGu---AGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224155 0.71 0.86687
Target:  5'- uGGCGcUGGCGcUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGUaGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224119 0.71 0.86687
Target:  5'- uGGCggUGGCGcUGGCGcUGGCGGUGGc -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 316176 0.71 0.859644
Target:  5'- cGGCggCGGCAccCGGCG-CGGCGGa-- -3'
miRNA:   3'- -CCGuaGCCGUa-GCCGUaGCCGUCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.