miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 224626 1.1 0.006309
Target:  5'- cGGCAUCGGCAUCGGCAUCGGCAGUAGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224740 1.02 0.020696
Target:  5'- cGGCAUCGGCAUCGGCAUCGGgAGUAGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGCCgUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 164290 0.81 0.397498
Target:  5'- cGGCAUCGGCAcCGGCAcCGGCAuGUc- -3'
miRNA:   3'- -CCGUAGCCGUaGCCGUaGCCGU-CAuc -5'
10381 3' -55.3 NC_002687.1 + 125147 0.81 0.35831
Target:  5'- uGUAUCGGCAUCGGCcUCGGCAucgcaugcGUGGu -3'
miRNA:   3'- cCGUAGCCGUAGCCGuAGCCGU--------CAUC- -5'
10381 3' -55.3 NC_002687.1 + 69051 0.76 0.636061
Target:  5'- cGGCggUGGCggUGGUGUCGGCGGUGc -3'
miRNA:   3'- -CCGuaGCCGuaGCCGUAGCCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 72558 0.76 0.606765
Target:  5'- cGGUguGUCGGCGgcggCGGCGUCGGCAc--- -3'
miRNA:   3'- -CCG--UAGCCGUa---GCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 100795 0.75 0.684732
Target:  5'- uGGCAUCGGCGacauuUCGGuCAcaccacUCGGCGGUc- -3'
miRNA:   3'- -CCGUAGCCGU-----AGCC-GU------AGCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 224455 0.75 0.684732
Target:  5'- uGGCggCGGCAgCGGCAgCGGCAGc-- -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUaGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 10328 0.75 0.694377
Target:  5'- cGGCAgUGGCggCGGCAguugUGGCAGUGu -3'
miRNA:   3'- -CCGUaGCCGuaGCCGUa---GCCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 147907 0.75 0.675047
Target:  5'- uGGCGUCGGCAUCaGCAUCcGCgAGUu- -3'
miRNA:   3'- -CCGUAGCCGUAGcCGUAGcCG-UCAuc -5'
10381 3' -55.3 NC_002687.1 + 170163 0.75 0.694377
Target:  5'- cGUGUCGaCGUCGGCGUCGGCcacgacacGGUGGa -3'
miRNA:   3'- cCGUAGCcGUAGCCGUAGCCG--------UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 307652 0.75 0.703976
Target:  5'- uGGgAUCGGCggCGGUggCGGUGGUGGu -3'
miRNA:   3'- -CCgUAGCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 295849 0.73 0.804151
Target:  5'- cGCAUaGGCG-CGGCGUuaCGGUAGUGGg -3'
miRNA:   3'- cCGUAgCCGUaGCCGUA--GCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 226933 0.73 0.804151
Target:  5'- gGGCGUCGcccCGUCGGCuccGUCGGCugccGGUGGu -3'
miRNA:   3'- -CCGUAGCc--GUAGCCG---UAGCCG----UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 281936 0.73 0.786913
Target:  5'- aGCAUCGGUcgCGGCAggagcaggGGCGGUGc -3'
miRNA:   3'- cCGUAGCCGuaGCCGUag------CCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 227211 0.73 0.7781
Target:  5'- gGGaCAUCGGCGcacacCGGCAggUCGGaCGGUAGc -3'
miRNA:   3'- -CC-GUAGCCGUa----GCCGU--AGCC-GUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 280950 0.72 0.841548
Target:  5'- aGCGUCGGCGggggccuggguggCGGCAgCGGCGGccgGGg -3'
miRNA:   3'- cCGUAGCCGUa------------GCCGUaGCCGUCa--UC- -5'
10381 3' -55.3 NC_002687.1 + 224764 0.72 0.81256
Target:  5'- cGcCAUCaGUAUCGGCAUCGGCAu--- -3'
miRNA:   3'- cC-GUAGcCGUAGCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 227149 0.72 0.836865
Target:  5'- cGGCAcCGGCAcCGGCAcCGGCAc--- -3'
miRNA:   3'- -CCGUaGCCGUaGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 224197 0.72 0.82082
Target:  5'- uGGCggUGGCggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGuaGCCGuaGCCGuaGCCGUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.