miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 10328 0.75 0.694377
Target:  5'- cGGCAgUGGCggCGGCAguugUGGCAGUGu -3'
miRNA:   3'- -CCGUaGCCGuaGCCGUa---GCCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 10365 0.67 0.970471
Target:  5'- aGGCGgagUGGCugCGGCGaCGGgGGUGGa -3'
miRNA:   3'- -CCGUa--GCCGuaGCCGUaGCCgUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 11410 0.69 0.942043
Target:  5'- cGGUAgcggUGGCAgcagCGGCAgCaGCAGUAGc -3'
miRNA:   3'- -CCGUa---GCCGUa---GCCGUaGcCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 24060 0.66 0.985623
Target:  5'- gGGCGUCGGCGgugaGGgGggGGguGUGc -3'
miRNA:   3'- -CCGUAGCCGUag--CCgUagCCguCAUc -5'
10381 3' -55.3 NC_002687.1 + 24436 0.69 0.94632
Target:  5'- gGGCuuccugCGGCAgUCGGagugcaGGCAGUGGg -3'
miRNA:   3'- -CCGua----GCCGU-AGCCguag--CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 69051 0.76 0.636061
Target:  5'- cGGCggUGGCggUGGUGUCGGCGGUGc -3'
miRNA:   3'- -CCGuaGCCGuaGCCGUAGCCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 71673 0.67 0.970471
Target:  5'- gGGCGUCGGgaagGUCGGCgauguuuggGUCaGCGGUGa -3'
miRNA:   3'- -CCGUAGCCg---UAGCCG---------UAGcCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 72558 0.76 0.606765
Target:  5'- cGGUguGUCGGCGgcggCGGCGUCGGCAc--- -3'
miRNA:   3'- -CCG--UAGCCGUa---GCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 78104 0.69 0.942043
Target:  5'- cGGCcgUGGCggCGGCGUcugaaaCGGCAGc-- -3'
miRNA:   3'- -CCGuaGCCGuaGCCGUA------GCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 87781 0.66 0.986724
Target:  5'- uGCAcCGGCAUCuGGUAgccgggcugcugacUCGGCcucuGGUAGa -3'
miRNA:   3'- cCGUaGCCGUAG-CCGU--------------AGCCG----UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 100795 0.75 0.684732
Target:  5'- uGGCAUCGGCGacauuUCGGuCAcaccacUCGGCGGUc- -3'
miRNA:   3'- -CCGUAGCCGU-----AGCC-GU------AGCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 103435 0.67 0.973142
Target:  5'- cGGCGUCGaCAUCGGCuuucuuGUUGGCcGUc- -3'
miRNA:   3'- -CCGUAGCcGUAGCCG------UAGCCGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 125147 0.81 0.35831
Target:  5'- uGUAUCGGCAUCGGCcUCGGCAucgcaugcGUGGu -3'
miRNA:   3'- cCGUAGCCGUAGCCGuAGCCGU--------CAUC- -5'
10381 3' -55.3 NC_002687.1 + 130724 0.68 0.950384
Target:  5'- uGGCGguggUGGUggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 145480 0.69 0.937551
Target:  5'- cGGCGcgcgccUCGGCGagcagaUCGGCAaguucgcguacUCGGCAGa-- -3'
miRNA:   3'- -CCGU------AGCCGU------AGCCGU-----------AGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 147907 0.75 0.675047
Target:  5'- uGGCGUCGGCAUCaGCAUCcGCgAGUu- -3'
miRNA:   3'- -CCGUAGCCGUAGcCGUAGcCG-UCAuc -5'
10381 3' -55.3 NC_002687.1 + 154484 0.69 0.932842
Target:  5'- uGGCuAUUGGCAacugCGaCAUCGGCAGggAGg -3'
miRNA:   3'- -CCG-UAGCCGUa---GCcGUAGCCGUCa-UC- -5'
10381 3' -55.3 NC_002687.1 + 164290 0.81 0.397498
Target:  5'- cGGCAUCGGCAcCGGCAcCGGCAuGUc- -3'
miRNA:   3'- -CCGUAGCCGUaGCCGUaGCCGU-CAuc -5'
10381 3' -55.3 NC_002687.1 + 164577 0.67 0.970471
Target:  5'- aGGCAgacacCGGC-UCGGCAcCGGCGa--- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 168558 0.68 0.950384
Target:  5'- gGGUcuggaaGGCAUCGGCAagGGUAGaAGg -3'
miRNA:   3'- -CCGuag---CCGUAGCCGUagCCGUCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.