miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 170163 0.75 0.694377
Target:  5'- cGUGUCGaCGUCGGCGUCGGCcacgacacGGUGGa -3'
miRNA:   3'- cCGUAGCcGUAGCCGUAGCCG--------UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 175101 0.67 0.967614
Target:  5'- cGGCGguucCGGCGguucCGGCGguucCGGCGGUu- -3'
miRNA:   3'- -CCGUa---GCCGUa---GCCGUa---GCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 200774 0.68 0.957884
Target:  5'- cGCA-CGGCAUCGGgaCAUCcGGCGGc-- -3'
miRNA:   3'- cCGUaGCCGUAGCC--GUAG-CCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 212326 0.66 0.989888
Target:  5'- uGGCAuccUCGGCGUCuucgGGCucgccaccGUCGacaGCGGUGGu -3'
miRNA:   3'- -CCGU---AGCCGUAG----CCG--------UAGC---CGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 215288 0.67 0.975634
Target:  5'- cGGCGaCGGCGauaggcUCGGCGaCGGCgacAGUGa -3'
miRNA:   3'- -CCGUaGCCGU------AGCCGUaGCCG---UCAUc -5'
10381 3' -55.3 NC_002687.1 + 215706 0.67 0.980104
Target:  5'- uGGCAUCGuCGUCGGUggCGGUcGUc- -3'
miRNA:   3'- -CCGUAGCcGUAGCCGuaGCCGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 215979 0.68 0.955721
Target:  5'- aGGuCGUCGGUcugacucggggugaaAUUGGCAUCGGguGcuUGGu -3'
miRNA:   3'- -CC-GUAGCCG---------------UAGCCGUAGCCguC--AUC- -5'
10381 3' -55.3 NC_002687.1 + 224119 0.71 0.86687
Target:  5'- uGGCggUGGCGcUGGCGcUGGCGGUGGc -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224155 0.71 0.86687
Target:  5'- uGGCGcUGGCGcUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGUaGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224197 0.72 0.82082
Target:  5'- uGGCggUGGCggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGuaGCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224455 0.75 0.684732
Target:  5'- uGGCggCGGCAgCGGCAgCGGCAGc-- -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUaGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 224626 1.1 0.006309
Target:  5'- cGGCAUCGGCAUCGGCAUCGGCAGUAGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224740 1.02 0.020696
Target:  5'- cGGCAUCGGCAUCGGCAUCGGgAGUAGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGCCgUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224764 0.72 0.81256
Target:  5'- cGcCAUCaGUAUCGGCAUCGGCAu--- -3'
miRNA:   3'- cC-GUAGcCGUAGCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 224862 0.66 0.987175
Target:  5'- cGCggCGGCGcCGGCAcggUCGGCAc--- -3'
miRNA:   3'- cCGuaGCCGUaGCCGU---AGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 226651 0.7 0.900025
Target:  5'- uGGCAUUGGCGccCuGCAUCGGCGaggaaggaugcGUGGa -3'
miRNA:   3'- -CCGUAGCCGUa-GcCGUAGCCGU-----------CAUC- -5'
10381 3' -55.3 NC_002687.1 + 226747 0.7 0.906034
Target:  5'- gGGUucucUCGGCAgCGGCggUGGUGGUAGc -3'
miRNA:   3'- -CCGu---AGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 226933 0.73 0.804151
Target:  5'- gGGCGUCGcccCGUCGGCuccGUCGGCugccGGUGGu -3'
miRNA:   3'- -CCGUAGCc--GUAGCCG---UAGCCG----UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 227149 0.72 0.836865
Target:  5'- cGGCAcCGGCAcCGGCAcCGGCAc--- -3'
miRNA:   3'- -CCGUaGCCGUaGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 227211 0.73 0.7781
Target:  5'- gGGaCAUCGGCGcacacCGGCAggUCGGaCGGUAGc -3'
miRNA:   3'- -CC-GUAGCCGUa----GCCGU--AGCC-GUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.