miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 249108 0.67 0.980104
Target:  5'- cGGUAcCGGCGUUGaagaGCGUCGGU-GUGGc -3'
miRNA:   3'- -CCGUaGCCGUAGC----CGUAGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 249270 0.66 0.985945
Target:  5'- cGGCAUCGGCAagacaaucaaggcUCGGacccuuuuugcgaaGGUGGUGGa -3'
miRNA:   3'- -CCGUAGCCGU-------------AGCCguag----------CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 251636 0.66 0.985623
Target:  5'- aGCAUCGGCAUCG-CGUCGaCuGUu- -3'
miRNA:   3'- cCGUAGCCGUAGCcGUAGCcGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 251691 0.7 0.906034
Target:  5'- aGGCGUUGGCGUCGGUGUCuaCgAGUGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGccG-UCAUc -5'
10381 3' -55.3 NC_002687.1 + 252081 0.69 0.932842
Target:  5'- aGCuUUGGUuuuGUCGGCGaagaacUUGGCAGUGGa -3'
miRNA:   3'- cCGuAGCCG---UAGCCGU------AGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 261320 0.66 0.982095
Target:  5'- gGGCggCGGCAaCGGCAU-GGCGaaGGg -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUAgCCGUcaUC- -5'
10381 3' -55.3 NC_002687.1 + 263075 0.66 0.983932
Target:  5'- uGGUAgauugUGGUcUCGGgAUCGGCGGg-- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCgUAGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 280950 0.72 0.841548
Target:  5'- aGCGUCGGCGggggccuggguggCGGCAgCGGCGGccgGGg -3'
miRNA:   3'- cCGUAGCCGUa------------GCCGUaGCCGUCa--UC- -5'
10381 3' -55.3 NC_002687.1 + 281936 0.73 0.786913
Target:  5'- aGCAUCGGUcgCGGCAggagcaggGGCGGUGc -3'
miRNA:   3'- cCGUAGCCGuaGCCGUag------CCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 293372 0.69 0.932842
Target:  5'- cGGgAUCGGC--CGGCAgugucaUCGGCAGa-- -3'
miRNA:   3'- -CCgUAGCCGuaGCCGU------AGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 295849 0.73 0.804151
Target:  5'- cGCAUaGGCG-CGGCGUuaCGGUAGUGGg -3'
miRNA:   3'- cCGUAgCCGUaGCCGUA--GCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 301014 0.66 0.983932
Target:  5'- aGCuucUCGGCGUCGGaua-GGCGGUc- -3'
miRNA:   3'- cCGu--AGCCGUAGCCguagCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 304531 0.69 0.927915
Target:  5'- cGGgGUCGGgGUCGGgGUCGG-AGUcGGg -3'
miRNA:   3'- -CCgUAGCCgUAGCCgUAGCCgUCA-UC- -5'
10381 3' -55.3 NC_002687.1 + 305163 0.69 0.94632
Target:  5'- uGGCGUCGGUugggCGGaCGuacuUCGGC-GUGGa -3'
miRNA:   3'- -CCGUAGCCGua--GCC-GU----AGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 307622 0.68 0.961326
Target:  5'- uGGCAcgggCGGCggCGGUGcUGGUGGUGGa -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGUaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 307652 0.75 0.703976
Target:  5'- uGGgAUCGGCggCGGUggCGGUGGUGGu -3'
miRNA:   3'- -CCgUAGCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 307710 0.66 0.982095
Target:  5'- aGCGaUGGUGaCGGCAUCaacgaaGGCAGUGGu -3'
miRNA:   3'- cCGUaGCCGUaGCCGUAG------CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 315990 0.66 0.98626
Target:  5'- cGGCAUagCGGUGuccUCGGCAgucguuccgaaugcuUCGGguGUAu -3'
miRNA:   3'- -CCGUA--GCCGU---AGCCGU---------------AGCCguCAUc -5'
10381 3' -55.3 NC_002687.1 + 316062 0.69 0.942043
Target:  5'- cGGCAggauUCGGUG-CGGC--UGGCGGUGGu -3'
miRNA:   3'- -CCGU----AGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 316176 0.71 0.859644
Target:  5'- cGGCggCGGCAccCGGCG-CGGCGGa-- -3'
miRNA:   3'- -CCGuaGCCGUa-GCCGUaGCCGUCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.