Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10381 | 3' | -55.3 | NC_002687.1 | + | 227211 | 0.73 | 0.7781 |
Target: 5'- gGGaCAUCGGCGcacacCGGCAggUCGGaCGGUAGc -3' miRNA: 3'- -CC-GUAGCCGUa----GCCGU--AGCC-GUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 227149 | 0.72 | 0.836865 |
Target: 5'- cGGCAcCGGCAcCGGCAcCGGCAc--- -3' miRNA: 3'- -CCGUaGCCGUaGCCGUaGCCGUcauc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 226933 | 0.73 | 0.804151 |
Target: 5'- gGGCGUCGcccCGUCGGCuccGUCGGCugccGGUGGu -3' miRNA: 3'- -CCGUAGCc--GUAGCCG---UAGCCG----UCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 226747 | 0.7 | 0.906034 |
Target: 5'- gGGUucucUCGGCAgCGGCggUGGUGGUAGc -3' miRNA: 3'- -CCGu---AGCCGUaGCCGuaGCCGUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 226651 | 0.7 | 0.900025 |
Target: 5'- uGGCAUUGGCGccCuGCAUCGGCGaggaaggaugcGUGGa -3' miRNA: 3'- -CCGUAGCCGUa-GcCGUAGCCGU-----------CAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224862 | 0.66 | 0.987175 |
Target: 5'- cGCggCGGCGcCGGCAcggUCGGCAc--- -3' miRNA: 3'- cCGuaGCCGUaGCCGU---AGCCGUcauc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224764 | 0.72 | 0.81256 |
Target: 5'- cGcCAUCaGUAUCGGCAUCGGCAu--- -3' miRNA: 3'- cC-GUAGcCGUAGCCGUAGCCGUcauc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224740 | 1.02 | 0.020696 |
Target: 5'- cGGCAUCGGCAUCGGCAUCGGgAGUAGc -3' miRNA: 3'- -CCGUAGCCGUAGCCGUAGCCgUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224626 | 1.1 | 0.006309 |
Target: 5'- cGGCAUCGGCAUCGGCAUCGGCAGUAGc -3' miRNA: 3'- -CCGUAGCCGUAGCCGUAGCCGUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224455 | 0.75 | 0.684732 |
Target: 5'- uGGCggCGGCAgCGGCAgCGGCAGc-- -3' miRNA: 3'- -CCGuaGCCGUaGCCGUaGCCGUCauc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224197 | 0.72 | 0.82082 |
Target: 5'- uGGCggUGGCggUGGCggUGGCGGUGGc -3' miRNA: 3'- -CCGuaGCCGuaGCCGuaGCCGUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224155 | 0.71 | 0.86687 |
Target: 5'- uGGCGcUGGCGcUGGCggUGGCGGUGGc -3' miRNA: 3'- -CCGUaGCCGUaGCCGuaGCCGUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 224119 | 0.71 | 0.86687 |
Target: 5'- uGGCggUGGCGcUGGCGcUGGCGGUGGc -3' miRNA: 3'- -CCGuaGCCGUaGCCGUaGCCGUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 215979 | 0.68 | 0.955721 |
Target: 5'- aGGuCGUCGGUcugacucggggugaaAUUGGCAUCGGguGcuUGGu -3' miRNA: 3'- -CC-GUAGCCG---------------UAGCCGUAGCCguC--AUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 215706 | 0.67 | 0.980104 |
Target: 5'- uGGCAUCGuCGUCGGUggCGGUcGUc- -3' miRNA: 3'- -CCGUAGCcGUAGCCGuaGCCGuCAuc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 215288 | 0.67 | 0.975634 |
Target: 5'- cGGCGaCGGCGauaggcUCGGCGaCGGCgacAGUGa -3' miRNA: 3'- -CCGUaGCCGU------AGCCGUaGCCG---UCAUc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 212326 | 0.66 | 0.989888 |
Target: 5'- uGGCAuccUCGGCGUCuucgGGCucgccaccGUCGacaGCGGUGGu -3' miRNA: 3'- -CCGU---AGCCGUAG----CCG--------UAGC---CGUCAUC- -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 200774 | 0.68 | 0.957884 |
Target: 5'- cGCA-CGGCAUCGGgaCAUCcGGCGGc-- -3' miRNA: 3'- cCGUaGCCGUAGCC--GUAG-CCGUCauc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 175101 | 0.67 | 0.967614 |
Target: 5'- cGGCGguucCGGCGguucCGGCGguucCGGCGGUu- -3' miRNA: 3'- -CCGUa---GCCGUa---GCCGUa---GCCGUCAuc -5' |
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10381 | 3' | -55.3 | NC_002687.1 | + | 170163 | 0.75 | 0.694377 |
Target: 5'- cGUGUCGaCGUCGGCGUCGGCcacgacacGGUGGa -3' miRNA: 3'- cCGUAGCcGUAGCCGUAGCCG--------UCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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