miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 212326 0.66 0.989888
Target:  5'- uGGCAuccUCGGCGUCuucgGGCucgccaccGUCGacaGCGGUGGu -3'
miRNA:   3'- -CCGU---AGCCGUAG----CCG--------UAGC---CGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 215979 0.68 0.955721
Target:  5'- aGGuCGUCGGUcugacucggggugaaAUUGGCAUCGGguGcuUGGu -3'
miRNA:   3'- -CC-GUAGCCG---------------UAGCCGUAGCCguC--AUC- -5'
10381 3' -55.3 NC_002687.1 + 261320 0.66 0.982095
Target:  5'- gGGCggCGGCAaCGGCAU-GGCGaaGGg -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUAgCCGUcaUC- -5'
10381 3' -55.3 NC_002687.1 + 280950 0.72 0.841548
Target:  5'- aGCGUCGGCGggggccuggguggCGGCAgCGGCGGccgGGg -3'
miRNA:   3'- cCGUAGCCGUa------------GCCGUaGCCGUCa--UC- -5'
10381 3' -55.3 NC_002687.1 + 224862 0.66 0.987175
Target:  5'- cGCggCGGCGcCGGCAcggUCGGCAc--- -3'
miRNA:   3'- cCGuaGCCGUaGCCGU---AGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 224197 0.72 0.82082
Target:  5'- uGGCggUGGCggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGuaGCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 295849 0.73 0.804151
Target:  5'- cGCAUaGGCG-CGGCGUuaCGGUAGUGGg -3'
miRNA:   3'- cCGUAgCCGUaGCCGUA--GCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 164577 0.67 0.970471
Target:  5'- aGGCAgacacCGGC-UCGGCAcCGGCGa--- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 249108 0.67 0.980104
Target:  5'- cGGUAcCGGCGUUGaagaGCGUCGGU-GUGGc -3'
miRNA:   3'- -CCGUaGCCGUAGC----CGUAGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 125147 0.81 0.35831
Target:  5'- uGUAUCGGCAUCGGCcUCGGCAucgcaugcGUGGu -3'
miRNA:   3'- cCGUAGCCGUAGCCGuAGCCGU--------CAUC- -5'
10381 3' -55.3 NC_002687.1 + 147907 0.75 0.675047
Target:  5'- uGGCGUCGGCAUCaGCAUCcGCgAGUu- -3'
miRNA:   3'- -CCGUAGCCGUAGcCGUAGcCG-UCAuc -5'
10381 3' -55.3 NC_002687.1 + 168558 0.68 0.950384
Target:  5'- gGGUcuggaaGGCAUCGGCAagGGUAGaAGg -3'
miRNA:   3'- -CCGuag---CCGUAGCCGUagCCGUCaUC- -5'
10381 3' -55.3 NC_002687.1 + 130724 0.68 0.950384
Target:  5'- uGGCGguggUGGUggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 200774 0.68 0.957884
Target:  5'- cGCA-CGGCAUCGGgaCAUCcGGCGGc-- -3'
miRNA:   3'- cCGUaGCCGUAGCC--GUAG-CCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 307622 0.68 0.961326
Target:  5'- uGGCAcgggCGGCggCGGUGcUGGUGGUGGa -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGUaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 316176 0.71 0.859644
Target:  5'- cGGCggCGGCAccCGGCG-CGGCGGa-- -3'
miRNA:   3'- -CCGuaGCCGUa-GCCGUaGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 227149 0.72 0.836865
Target:  5'- cGGCAcCGGCAcCGGCAcCGGCAc--- -3'
miRNA:   3'- -CCGUaGCCGUaGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 224764 0.72 0.81256
Target:  5'- cGcCAUCaGUAUCGGCAUCGGCAu--- -3'
miRNA:   3'- cC-GUAGcCGUAGCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 307652 0.75 0.703976
Target:  5'- uGGgAUCGGCggCGGUggCGGUGGUGGu -3'
miRNA:   3'- -CCgUAGCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 170163 0.75 0.694377
Target:  5'- cGUGUCGaCGUCGGCGUCGGCcacgacacGGUGGa -3'
miRNA:   3'- cCGUAGCcGUAGCCGUAGCCG--------UCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.