miRNA display CGI


Results 41 - 60 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 263075 0.66 0.983932
Target:  5'- uGGUAgauugUGGUcUCGGgAUCGGCGGg-- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCgUAGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 301014 0.66 0.983932
Target:  5'- aGCuucUCGGCGUCGGaua-GGCGGUc- -3'
miRNA:   3'- cCGu--AGCCGUAGCCguagCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 251636 0.66 0.985623
Target:  5'- aGCAUCGGCAUCG-CGUCGaCuGUu- -3'
miRNA:   3'- cCGUAGCCGUAGCcGUAGCcGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 24060 0.66 0.985623
Target:  5'- gGGCGUCGGCGgugaGGgGggGGguGUGc -3'
miRNA:   3'- -CCGUAGCCGUag--CCgUagCCguCAUc -5'
10381 3' -55.3 NC_002687.1 + 168558 0.68 0.950384
Target:  5'- gGGUcuggaaGGCAUCGGCAagGGUAGaAGg -3'
miRNA:   3'- -CCGuag---CCGUAGCCGUagCCGUCaUC- -5'
10381 3' -55.3 NC_002687.1 + 305163 0.69 0.94632
Target:  5'- uGGCGUCGGUugggCGGaCGuacuUCGGC-GUGGa -3'
miRNA:   3'- -CCGUAGCCGua--GCC-GU----AGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 24436 0.69 0.94632
Target:  5'- gGGCuuccugCGGCAgUCGGagugcaGGCAGUGGg -3'
miRNA:   3'- -CCGua----GCCGU-AGCCguag--CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 125147 0.81 0.35831
Target:  5'- uGUAUCGGCAUCGGCcUCGGCAucgcaugcGUGGu -3'
miRNA:   3'- cCGUAGCCGUAGCCGuAGCCGU--------CAUC- -5'
10381 3' -55.3 NC_002687.1 + 147907 0.75 0.675047
Target:  5'- uGGCGUCGGCAUCaGCAUCcGCgAGUu- -3'
miRNA:   3'- -CCGUAGCCGUAGcCGUAGcCG-UCAuc -5'
10381 3' -55.3 NC_002687.1 + 170163 0.75 0.694377
Target:  5'- cGUGUCGaCGUCGGCGUCGGCcacgacacGGUGGa -3'
miRNA:   3'- cCGUAGCcGUAGCCGUAGCCG--------UCAUC- -5'
10381 3' -55.3 NC_002687.1 + 307652 0.75 0.703976
Target:  5'- uGGgAUCGGCggCGGUggCGGUGGUGGu -3'
miRNA:   3'- -CCgUAGCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 224764 0.72 0.81256
Target:  5'- cGcCAUCaGUAUCGGCAUCGGCAu--- -3'
miRNA:   3'- cC-GUAGcCGUAGCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 227149 0.72 0.836865
Target:  5'- cGGCAcCGGCAcCGGCAcCGGCAc--- -3'
miRNA:   3'- -CCGUaGCCGUaGCCGUaGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 251691 0.7 0.906034
Target:  5'- aGGCGUUGGCGUCGGUGUCuaCgAGUGc -3'
miRNA:   3'- -CCGUAGCCGUAGCCGUAGccG-UCAUc -5'
10381 3' -55.3 NC_002687.1 + 304531 0.69 0.927915
Target:  5'- cGGgGUCGGgGUCGGgGUCGG-AGUcGGg -3'
miRNA:   3'- -CCgUAGCCgUAGCCgUAGCCgUCA-UC- -5'
10381 3' -55.3 NC_002687.1 + 154484 0.69 0.932842
Target:  5'- uGGCuAUUGGCAacugCGaCAUCGGCAGggAGg -3'
miRNA:   3'- -CCG-UAGCCGUa---GCcGUAGCCGUCa-UC- -5'
10381 3' -55.3 NC_002687.1 + 293372 0.69 0.932842
Target:  5'- cGGgAUCGGC--CGGCAgugucaUCGGCAGa-- -3'
miRNA:   3'- -CCgUAGCCGuaGCCGU------AGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 316062 0.69 0.942043
Target:  5'- cGGCAggauUCGGUG-CGGC--UGGCGGUGGu -3'
miRNA:   3'- -CCGU----AGCCGUaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 78104 0.69 0.942043
Target:  5'- cGGCcgUGGCggCGGCGUcugaaaCGGCAGc-- -3'
miRNA:   3'- -CCGuaGCCGuaGCCGUA------GCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 87781 0.66 0.986724
Target:  5'- uGCAcCGGCAUCuGGUAgccgggcugcugacUCGGCcucuGGUAGa -3'
miRNA:   3'- cCGUaGCCGUAG-CCGU--------------AGCCG----UCAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.