miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 3' -55.3 NC_002687.1 + 301014 0.66 0.983932
Target:  5'- aGCuucUCGGCGUCGGaua-GGCGGUc- -3'
miRNA:   3'- cCGu--AGCCGUAGCCguagCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 263075 0.66 0.983932
Target:  5'- uGGUAgauugUGGUcUCGGgAUCGGCGGg-- -3'
miRNA:   3'- -CCGUa----GCCGuAGCCgUAGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 307710 0.66 0.982095
Target:  5'- aGCGaUGGUGaCGGCAUCaacgaaGGCAGUGGu -3'
miRNA:   3'- cCGUaGCCGUaGCCGUAG------CCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 249108 0.67 0.980104
Target:  5'- cGGUAcCGGCGUUGaagaGCGUCGGU-GUGGc -3'
miRNA:   3'- -CCGUaGCCGUAGC----CGUAGCCGuCAUC- -5'
10381 3' -55.3 NC_002687.1 + 215706 0.67 0.980104
Target:  5'- uGGCAUCGuCGUCGGUggCGGUcGUc- -3'
miRNA:   3'- -CCGUAGCcGUAGCCGuaGCCGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 103435 0.67 0.973142
Target:  5'- cGGCGUCGaCAUCGGCuuucuuGUUGGCcGUc- -3'
miRNA:   3'- -CCGUAGCcGUAGCCG------UAGCCGuCAuc -5'
10381 3' -55.3 NC_002687.1 + 168558 0.68 0.950384
Target:  5'- gGGUcuggaaGGCAUCGGCAagGGUAGaAGg -3'
miRNA:   3'- -CCGuag---CCGUAGCCGUagCCGUCaUC- -5'
10381 3' -55.3 NC_002687.1 + 130724 0.68 0.950384
Target:  5'- uGGCGguggUGGUggUGGCggUGGCGGUGGc -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGuaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 200774 0.68 0.957884
Target:  5'- cGCA-CGGCAUCGGgaCAUCcGGCGGc-- -3'
miRNA:   3'- cCGUaGCCGUAGCC--GUAG-CCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 307622 0.68 0.961326
Target:  5'- uGGCAcgggCGGCggCGGUGcUGGUGGUGGa -3'
miRNA:   3'- -CCGUa---GCCGuaGCCGUaGCCGUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 175101 0.67 0.967614
Target:  5'- cGGCGguucCGGCGguucCGGCGguucCGGCGGUu- -3'
miRNA:   3'- -CCGUa---GCCGUa---GCCGUa---GCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 71673 0.67 0.970471
Target:  5'- gGGCGUCGGgaagGUCGGCgauguuuggGUCaGCGGUGa -3'
miRNA:   3'- -CCGUAGCCg---UAGCCG---------UAGcCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 281936 0.73 0.786913
Target:  5'- aGCAUCGGUcgCGGCAggagcaggGGCGGUGc -3'
miRNA:   3'- cCGUAGCCGuaGCCGUag------CCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 227211 0.73 0.7781
Target:  5'- gGGaCAUCGGCGcacacCGGCAggUCGGaCGGUAGc -3'
miRNA:   3'- -CC-GUAGCCGUa----GCCGU--AGCC-GUCAUC- -5'
10381 3' -55.3 NC_002687.1 + 10328 0.75 0.694377
Target:  5'- cGGCAgUGGCggCGGCAguugUGGCAGUGu -3'
miRNA:   3'- -CCGUaGCCGuaGCCGUa---GCCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 100795 0.75 0.684732
Target:  5'- uGGCAUCGGCGacauuUCGGuCAcaccacUCGGCGGUc- -3'
miRNA:   3'- -CCGUAGCCGU-----AGCC-GU------AGCCGUCAuc -5'
10381 3' -55.3 NC_002687.1 + 224455 0.75 0.684732
Target:  5'- uGGCggCGGCAgCGGCAgCGGCAGc-- -3'
miRNA:   3'- -CCGuaGCCGUaGCCGUaGCCGUCauc -5'
10381 3' -55.3 NC_002687.1 + 69051 0.76 0.636061
Target:  5'- cGGCggUGGCggUGGUGUCGGCGGUGc -3'
miRNA:   3'- -CCGuaGCCGuaGCCGUAGCCGUCAUc -5'
10381 3' -55.3 NC_002687.1 + 72558 0.76 0.606765
Target:  5'- cGGUguGUCGGCGgcggCGGCGUCGGCAc--- -3'
miRNA:   3'- -CCG--UAGCCGUa---GCCGUAGCCGUcauc -5'
10381 3' -55.3 NC_002687.1 + 212326 0.66 0.989888
Target:  5'- uGGCAuccUCGGCGUCuucgGGCucgccaccGUCGacaGCGGUGGu -3'
miRNA:   3'- -CCGU---AGCCGUAG----CCG--------UAGC---CGUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.