miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10381 5' -57 NC_002687.1 + 211718 0.65 0.976045
Target:  5'- gGCCcaucuggucuucaaAUCGCCGUCcaucaaguucucgGCUuuguauucGUCGCCGUCGu -3'
miRNA:   3'- gCGG--------------UAGCGGUAG-------------CGG--------UAGCGGUAGC- -5'
10381 5' -57 NC_002687.1 + 33383 0.66 0.974612
Target:  5'- --aCAUUGCCGgcgaaUCGCCuccaCGCCGUCa -3'
miRNA:   3'- gcgGUAGCGGU-----AGCGGua--GCGGUAGc -5'
10381 5' -57 NC_002687.1 + 10543 0.66 0.974612
Target:  5'- aCGUUcUCGCUcggGCgAUCGCCGUCGg -3'
miRNA:   3'- -GCGGuAGCGGuagCGgUAGCGGUAGC- -5'
10381 5' -57 NC_002687.1 + 267692 0.66 0.974612
Target:  5'- aGUCAUCGCCGaCGCCcaUGUCAUg- -3'
miRNA:   3'- gCGGUAGCGGUaGCGGuaGCGGUAgc -5'
10381 5' -57 NC_002687.1 + 235038 0.66 0.974612
Target:  5'- gCGUCAUCgGCCuguccucauuUUGaUCAUCGCCGUCa -3'
miRNA:   3'- -GCGGUAG-CGGu---------AGC-GGUAGCGGUAGc -5'
10381 5' -57 NC_002687.1 + 227367 0.66 0.974612
Target:  5'- aGCCG-CuCCGUCGUCGUCcUCGUCGg -3'
miRNA:   3'- gCGGUaGcGGUAGCGGUAGcGGUAGC- -5'
10381 5' -57 NC_002687.1 + 123334 0.66 0.974612
Target:  5'- uCGUCAUCGUCGguggGCCcUCGaCCGUCu -3'
miRNA:   3'- -GCGGUAGCGGUag--CGGuAGC-GGUAGc -5'
10381 5' -57 NC_002687.1 + 85052 0.66 0.973623
Target:  5'- gCGCCAagguggaugacacCGUCAUCGCUGUUGaCAUCGa -3'
miRNA:   3'- -GCGGUa------------GCGGUAGCGGUAGCgGUAGC- -5'
10381 5' -57 NC_002687.1 + 315818 0.66 0.972087
Target:  5'- cCGCCG-CGCCGggUGCCGcCGCCGc-- -3'
miRNA:   3'- -GCGGUaGCGGUa-GCGGUaGCGGUagc -5'
10381 5' -57 NC_002687.1 + 226887 0.66 0.969386
Target:  5'- aGCCGUC-CCAgcagUC-CCAgcggCGCCAUCa -3'
miRNA:   3'- gCGGUAGcGGU----AGcGGUa---GCGGUAGc -5'
10381 5' -57 NC_002687.1 + 159747 0.66 0.969386
Target:  5'- aGCUcuGUCGgCGUCGUCGgcuugUGCCAUCc -3'
miRNA:   3'- gCGG--UAGCgGUAGCGGUa----GCGGUAGc -5'
10381 5' -57 NC_002687.1 + 94961 0.66 0.966503
Target:  5'- uCGUCAaCGCUcUCGCCGagcaUCGCCA-CGu -3'
miRNA:   3'- -GCGGUaGCGGuAGCGGU----AGCGGUaGC- -5'
10381 5' -57 NC_002687.1 + 3064 0.66 0.966503
Target:  5'- aGCCGUUGauCCGUCGCuCAUgCGaCUGUCGa -3'
miRNA:   3'- gCGGUAGC--GGUAGCG-GUA-GC-GGUAGC- -5'
10381 5' -57 NC_002687.1 + 278123 0.66 0.966503
Target:  5'- aCGCCcaacuUCcUCAacUCGCCAUCGCCuUCa -3'
miRNA:   3'- -GCGGu----AGcGGU--AGCGGUAGCGGuAGc -5'
10381 5' -57 NC_002687.1 + 311305 0.66 0.966503
Target:  5'- gGCCAuuUCGCCGUgcguggcgCGCCGcaacCGCCGUUc -3'
miRNA:   3'- gCGGU--AGCGGUA--------GCGGUa---GCGGUAGc -5'
10381 5' -57 NC_002687.1 + 71820 0.66 0.966503
Target:  5'- gCGCCGUCGUgcuagcggcacuCGUCGUCuUCGCU-UCGg -3'
miRNA:   3'- -GCGGUAGCG------------GUAGCGGuAGCGGuAGC- -5'
10381 5' -57 NC_002687.1 + 42126 0.66 0.963433
Target:  5'- uGCaAUCGCCGUaGCCAUaGCCAUg- -3'
miRNA:   3'- gCGgUAGCGGUAgCGGUAgCGGUAgc -5'
10381 5' -57 NC_002687.1 + 43168 0.66 0.963433
Target:  5'- aGCUcUCGCCGUCGCagaaCGCCGc-- -3'
miRNA:   3'- gCGGuAGCGGUAGCGgua-GCGGUagc -5'
10381 5' -57 NC_002687.1 + 154178 0.67 0.960173
Target:  5'- gGCCAccaacgCGCCAaCGCUuccGUCGCCAaUCu -3'
miRNA:   3'- gCGGUa-----GCGGUaGCGG---UAGCGGU-AGc -5'
10381 5' -57 NC_002687.1 + 41922 0.67 0.960173
Target:  5'- gGCgCAUCGUucuucucaaCGUCGaCGUCGUCAUCGu -3'
miRNA:   3'- gCG-GUAGCG---------GUAGCgGUAGCGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.