miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10382 3' -57 NC_002687.1 + 263080 0.66 0.969469
Target:  5'- uCGUCuGGUAgauugUGGUcUCGGgAUCGGCGg -3'
miRNA:   3'- -GUAG-CCGUa----GCCGuAGCCgUAGCCGU- -5'
10382 3' -57 NC_002687.1 + 200777 0.66 0.966566
Target:  5'- --gCGcGCA-CGGCAUCGGgaCAUcCGGCGg -3'
miRNA:   3'- guaGC-CGUaGCCGUAGCC--GUA-GCCGU- -5'
10382 3' -57 NC_002687.1 + 100645 0.66 0.966566
Target:  5'- aCAUCGGCAUcaacgucgacacCGGUgccgccuucaccGUCGGCGaCGcGCAa -3'
miRNA:   3'- -GUAGCCGUA------------GCCG------------UAGCCGUaGC-CGU- -5'
10382 3' -57 NC_002687.1 + 200832 0.66 0.963474
Target:  5'- uGUCGGUca-GGC-UCGGCAUCuGCu -3'
miRNA:   3'- gUAGCCGuagCCGuAGCCGUAGcCGu -5'
10382 3' -57 NC_002687.1 + 227214 0.66 0.960188
Target:  5'- aCAUCGGCGcacacCGGCAggUCGGa--CGGUAg -3'
miRNA:   3'- -GUAGCCGUa----GCCGU--AGCCguaGCCGU- -5'
10382 3' -57 NC_002687.1 + 163997 0.66 0.960188
Target:  5'- uCGUCGGUGUCGagGUCGuCGUCGGUAc -3'
miRNA:   3'- -GUAGCCGUAGCcgUAGCcGUAGCCGU- -5'
10382 3' -57 NC_002687.1 + 226754 0.66 0.960188
Target:  5'- -cUCGGCAgCGGCGguggUGGUAgCGGUg -3'
miRNA:   3'- guAGCCGUaGCCGUa---GCCGUaGCCGu -5'
10382 3' -57 NC_002687.1 + 168557 0.66 0.960188
Target:  5'- gGUCuGGaa--GGCAUCGGCAagGGUAg -3'
miRNA:   3'- gUAG-CCguagCCGUAGCCGUagCCGU- -5'
10382 3' -57 NC_002687.1 + 307649 0.66 0.960188
Target:  5'- gAUCGGCggCGGUggCGGUggUGGUg -3'
miRNA:   3'- gUAGCCGuaGCCGuaGCCGuaGCCGu -5'
10382 3' -57 NC_002687.1 + 259786 0.66 0.956703
Target:  5'- uCGUUGGCGcCGGCGUCG-C-UCGGUu -3'
miRNA:   3'- -GUAGCCGUaGCCGUAGCcGuAGCCGu -5'
10382 3' -57 NC_002687.1 + 328247 0.67 0.954516
Target:  5'- aCGUCGGCgAUCGuGCcacacgagaucaaagAUCGGCGcgGGCAg -3'
miRNA:   3'- -GUAGCCG-UAGC-CG---------------UAGCCGUagCCGU- -5'
10382 3' -57 NC_002687.1 + 85321 0.67 0.953016
Target:  5'- cCGUCGGUcccGUCGGUcccAUCGGUcccgcgggucccGUCGGUc -3'
miRNA:   3'- -GUAGCCG---UAGCCG---UAGCCG------------UAGCCGu -5'
10382 3' -57 NC_002687.1 + 154490 0.67 0.953016
Target:  5'- -cUCGGCuggcuAUUGGCAacugCGaCAUCGGCAg -3'
miRNA:   3'- guAGCCG-----UAGCCGUa---GCcGUAGCCGU- -5'
10382 3' -57 NC_002687.1 + 96756 0.67 0.951484
Target:  5'- uGUCGGaauugGUCGGCAcaccuuucauccgCGGCGcCGGCAc -3'
miRNA:   3'- gUAGCCg----UAGCCGUa------------GCCGUaGCCGU- -5'
10382 3' -57 NC_002687.1 + 157630 0.67 0.948723
Target:  5'- uCGUCGGCgcuucccGUCGcGCucAUCGGUAUCaGCGa -3'
miRNA:   3'- -GUAGCCG-------UAGC-CG--UAGCCGUAGcCGU- -5'
10382 3' -57 NC_002687.1 + 279084 0.67 0.947915
Target:  5'- cCAUCGGCuguGUCuGGCGggGGUgugccaagaugugaAUCGGCAg -3'
miRNA:   3'- -GUAGCCG---UAG-CCGUagCCG--------------UAGCCGU- -5'
10382 3' -57 NC_002687.1 + 137523 0.67 0.945023
Target:  5'- aAUCGGCGgaaUCGGUGUCGcuGCuuUCGGUg -3'
miRNA:   3'- gUAGCCGU---AGCCGUAGC--CGu-AGCCGu -5'
10382 3' -57 NC_002687.1 + 215707 0.67 0.945023
Target:  5'- --gUGGCAUCGuCGUCGGUggCGGUc -3'
miRNA:   3'- guaGCCGUAGCcGUAGCCGuaGCCGu -5'
10382 3' -57 NC_002687.1 + 249109 0.67 0.945023
Target:  5'- --aCGGUAcCGGCGUUGaagaGCGUCGGUg -3'
miRNA:   3'- guaGCCGUaGCCGUAGC----CGUAGCCGu -5'
10382 3' -57 NC_002687.1 + 125238 0.67 0.940711
Target:  5'- --aCGGCGUCuGCAUgUGGCAcgaCGGCGa -3'
miRNA:   3'- guaGCCGUAGcCGUA-GCCGUa--GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.