miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10382 5' -58.3 NC_002687.1 + 107875 0.66 0.928776
Target:  5'- --gGCCAUCGCCGUCgGCCcacauUCuGUCAa -3'
miRNA:   3'- uagCGGUAGCGGUAG-CGGu----AG-CGGUa -5'
10382 5' -58.3 NC_002687.1 + 141775 0.66 0.928776
Target:  5'- gAUCGCCGcCGgCAaccUUGgCAUCGCCAa -3'
miRNA:   3'- -UAGCGGUaGCgGU---AGCgGUAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 112056 0.66 0.928776
Target:  5'- -aUGCCGUCGUCGaUGCCAUUgGCCu- -3'
miRNA:   3'- uaGCGGUAGCGGUaGCGGUAG-CGGua -5'
10382 5' -58.3 NC_002687.1 + 114218 0.66 0.927268
Target:  5'- --aGCCAUgGCUGUCcccgcuugcaacaaGCCGUUGCCAa -3'
miRNA:   3'- uagCGGUAgCGGUAG--------------CGGUAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 154175 0.66 0.918352
Target:  5'- cAUgGCCAccaacgCGCCAaCGCUuccGUCGCCAa -3'
miRNA:   3'- -UAgCGGUa-----GCGGUaGCGG---UAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 58573 0.66 0.917808
Target:  5'- gAUCGCgAuacagacUUGCgCGUCGCCAUCGUCc- -3'
miRNA:   3'- -UAGCGgU-------AGCG-GUAGCGGUAGCGGua -5'
10382 5' -58.3 NC_002687.1 + 315818 0.66 0.912814
Target:  5'- -cCGCCG-CGCCGggUGCCGcCGCCGc -3'
miRNA:   3'- uaGCGGUaGCGGUa-GCGGUaGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 309399 0.66 0.912814
Target:  5'- cAUCGgagaUGUCGCCuUCGCCGUUGUCGg -3'
miRNA:   3'- -UAGCg---GUAGCGGuAGCGGUAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 81479 0.66 0.90706
Target:  5'- cUCGUCAUCaCCAuucccguugUCGCCGUCGgCAc -3'
miRNA:   3'- uAGCGGUAGcGGU---------AGCGGUAGCgGUa -5'
10382 5' -58.3 NC_002687.1 + 124875 0.67 0.901093
Target:  5'- uUCGCCGUCguGCCAcaugcagaCGCCGUUGaCCAUc -3'
miRNA:   3'- uAGCGGUAG--CGGUa-------GCGGUAGC-GGUA- -5'
10382 5' -58.3 NC_002687.1 + 224471 0.67 0.901093
Target:  5'- -gCGCCAgCGCCAcCGCCAcCGCg-- -3'
miRNA:   3'- uaGCGGUaGCGGUaGCGGUaGCGgua -5'
10382 5' -58.3 NC_002687.1 + 18414 0.67 0.89741
Target:  5'- cUCGCUGUCGUUguccccuuuggugaaAUCGCUGUCGCUAc -3'
miRNA:   3'- uAGCGGUAGCGG---------------UAGCGGUAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 10680 0.67 0.894913
Target:  5'- -cUGCCGcCGCCAcUGCCGcCGCCAc -3'
miRNA:   3'- uaGCGGUaGCGGUaGCGGUaGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 331894 0.67 0.888525
Target:  5'- aAUCGCCuccaCGCCcaagCGCCGcCGCCGc -3'
miRNA:   3'- -UAGCGGua--GCGGua--GCGGUaGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 42124 0.67 0.881931
Target:  5'- cUUGCaAUCGCCGUaGCCAUaGCCAUg -3'
miRNA:   3'- uAGCGgUAGCGGUAgCGGUAgCGGUA- -5'
10382 5' -58.3 NC_002687.1 + 65559 0.67 0.875135
Target:  5'- -aUGCCGU-GCCGUCGCCggUGuCCAUg -3'
miRNA:   3'- uaGCGGUAgCGGUAGCGGuaGC-GGUA- -5'
10382 5' -58.3 NC_002687.1 + 164157 0.67 0.868141
Target:  5'- aGUCGCCAgagUCGCCggaGUCGUCA-CGCaCAg -3'
miRNA:   3'- -UAGCGGU---AGCGG---UAGCGGUaGCG-GUa -5'
10382 5' -58.3 NC_002687.1 + 315333 0.67 0.868141
Target:  5'- aAUCGCCAUCaG-CAUCGUCcgggucuggcGUCGCCAc -3'
miRNA:   3'- -UAGCGGUAG-CgGUAGCGG----------UAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 88410 0.68 0.860955
Target:  5'- uGUCGUCGUCGCaauacCGCuCGUCGUCAg -3'
miRNA:   3'- -UAGCGGUAGCGgua--GCG-GUAGCGGUa -5'
10382 5' -58.3 NC_002687.1 + 208757 0.68 0.860955
Target:  5'- cGUCGUCGUCacugcugcuuCCAUCGUCGUCGCUg- -3'
miRNA:   3'- -UAGCGGUAGc---------GGUAGCGGUAGCGGua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.