miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10383 3' -50.9 NC_002687.1 + 60866 0.66 0.999724
Target:  5'- gUGCGUaagcucUGUCGgccAGCUGGCgAUGcguGCg -3'
miRNA:   3'- gACGCA------AUAGU---UCGACCGgUGCuu-CG- -5'
10383 3' -50.9 NC_002687.1 + 253846 0.66 0.999724
Target:  5'- -cGCGUgcUCGAGCUGaacGCUucugACGAAcGCg -3'
miRNA:   3'- gaCGCAauAGUUCGAC---CGG----UGCUU-CG- -5'
10383 3' -50.9 NC_002687.1 + 219062 0.66 0.999724
Target:  5'- -gGCGUgcUCc-GC-GGCCACGGAGa -3'
miRNA:   3'- gaCGCAauAGuuCGaCCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 123278 0.66 0.999718
Target:  5'- -cGCGaguucAUCAAGCcGGCCuACGAgacgaucGGCg -3'
miRNA:   3'- gaCGCaa---UAGUUCGaCCGG-UGCU-------UCG- -5'
10383 3' -50.9 NC_002687.1 + 135358 0.66 0.999685
Target:  5'- uUGgGUUGUCGAuccGUaaagagacguugccgUGGCCGCGGucgAGCa -3'
miRNA:   3'- gACgCAAUAGUU---CG---------------ACCGGUGCU---UCG- -5'
10383 3' -50.9 NC_002687.1 + 18615 0.66 0.999656
Target:  5'- gUGUGggAcCAgaAGCUGccGCCACGggGUu -3'
miRNA:   3'- gACGCaaUaGU--UCGAC--CGGUGCuuCG- -5'
10383 3' -50.9 NC_002687.1 + 260027 0.66 0.999656
Target:  5'- -aGCGUgagauUGUCcGGUgGGCCGCGGuuuacgAGCa -3'
miRNA:   3'- gaCGCA-----AUAGuUCGaCCGGUGCU------UCG- -5'
10383 3' -50.9 NC_002687.1 + 140230 0.66 0.999572
Target:  5'- -aGUGUg--CAcacAGC-GGCCACGAAGg -3'
miRNA:   3'- gaCGCAauaGU---UCGaCCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 18637 0.66 0.999572
Target:  5'- -gGUGUga--AGGCagUGGCCAgGAGGCc -3'
miRNA:   3'- gaCGCAauagUUCG--ACCGGUgCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 11287 0.66 0.999514
Target:  5'- -cGCGU--UCAAggagaucgccucucuGCUGGCCGCGGuccuGUg -3'
miRNA:   3'- gaCGCAauAGUU---------------CGACCGGUGCUu---CG- -5'
10383 3' -50.9 NC_002687.1 + 155679 0.66 0.999472
Target:  5'- -aGuCGUgGUCAAGuCUaGGuCCACGggGUa -3'
miRNA:   3'- gaC-GCAaUAGUUC-GA-CC-GGUGCuuCG- -5'
10383 3' -50.9 NC_002687.1 + 219425 0.66 0.999472
Target:  5'- aCUGCu---UCuccgUGGCCGCGGAGCa -3'
miRNA:   3'- -GACGcaauAGuucgACCGGUGCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 301276 0.66 0.999351
Target:  5'- aUGUG-UGUCuGGagagGGCCACGGAGg -3'
miRNA:   3'- gACGCaAUAGuUCga--CCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 158057 0.66 0.999351
Target:  5'- uUGCa--AUCcAGgaGGCCACgGAAGCa -3'
miRNA:   3'- gACGcaaUAGuUCgaCCGGUG-CUUCG- -5'
10383 3' -50.9 NC_002687.1 + 319591 0.66 0.999208
Target:  5'- -aGCGUUcgCGAGagaagcacGGCCugGGAGa -3'
miRNA:   3'- gaCGCAAuaGUUCga------CCGGugCUUCg -5'
10383 3' -50.9 NC_002687.1 + 85855 0.66 0.999208
Target:  5'- -aGCGggucCAGGgaGGCCGCGu-GCa -3'
miRNA:   3'- gaCGCaauaGUUCgaCCGGUGCuuCG- -5'
10383 3' -50.9 NC_002687.1 + 167910 0.66 0.999208
Target:  5'- gUGCGUcGUUggAGGCccgacguuGCCGCGAAGCu -3'
miRNA:   3'- gACGCAaUAG--UUCGac------CGGUGCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 219698 0.66 0.999176
Target:  5'- aUGCuuccacagCAAGCaucuUGGCCACGGAGg -3'
miRNA:   3'- gACGcaaua---GUUCG----ACCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 149494 0.67 0.999038
Target:  5'- -aGCGgggaacacUUAUCAAGCUGGggaUCAgGGAGUg -3'
miRNA:   3'- gaCGC--------AAUAGUUCGACC---GGUgCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 8205 0.67 0.999038
Target:  5'- -gGCGUUAcCGAGcCUGaGCCAUGGAa- -3'
miRNA:   3'- gaCGCAAUaGUUC-GAC-CGGUGCUUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.