miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10383 3' -50.9 NC_002687.1 + 137060 0.76 0.842784
Target:  5'- -aGUG-UGUCAGGCUGGCCAaGAGGg -3'
miRNA:   3'- gaCGCaAUAGUUCGACCGGUgCUUCg -5'
10383 3' -50.9 NC_002687.1 + 260027 0.66 0.999656
Target:  5'- -aGCGUgagauUGUCcGGUgGGCCGCGGuuuacgAGCa -3'
miRNA:   3'- gaCGCA-----AUAGuUCGaCCGGUGCU------UCG- -5'
10383 3' -50.9 NC_002687.1 + 219062 0.66 0.999724
Target:  5'- -gGCGUgcUCc-GC-GGCCACGGAGa -3'
miRNA:   3'- gaCGCAauAGuuCGaCCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 253846 0.66 0.999724
Target:  5'- -cGCGUgcUCGAGCUGaacGCUucugACGAAcGCg -3'
miRNA:   3'- gaCGCAauAGUUCGAC---CGG----UGCUU-CG- -5'
10383 3' -50.9 NC_002687.1 + 270036 0.69 0.99111
Target:  5'- -gGUGgauugUAUgCAgcAGCUGGUCGCGGAGUa -3'
miRNA:   3'- gaCGCa----AUA-GU--UCGACCGGUGCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 291308 0.69 0.99111
Target:  5'- -cGCGgugcccAGC-GGCCGCGAGGCu -3'
miRNA:   3'- gaCGCaauaguUCGaCCGGUGCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 330802 0.68 0.997228
Target:  5'- -gGCaGUUGgggAGGCaUGGCCACGGAGa -3'
miRNA:   3'- gaCG-CAAUag-UUCG-ACCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 233799 0.67 0.998014
Target:  5'- -cGCGUgccaAAGC-GGCCAUGaAAGCu -3'
miRNA:   3'- gaCGCAauagUUCGaCCGGUGC-UUCG- -5'
10383 3' -50.9 NC_002687.1 + 312650 0.67 0.998839
Target:  5'- uUGCGUUuUC-GGCagUGGUCACGcGAGCc -3'
miRNA:   3'- gACGCAAuAGuUCG--ACCGGUGC-UUCG- -5'
10383 3' -50.9 NC_002687.1 + 140230 0.66 0.999572
Target:  5'- -aGUGUg--CAcacAGC-GGCCACGAAGg -3'
miRNA:   3'- gaCGCAauaGU---UCGaCCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 301276 0.66 0.999351
Target:  5'- aUGUG-UGUCuGGagagGGCCACGGAGg -3'
miRNA:   3'- gACGCaAUAGuUCga--CCGGUGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 138764 0.67 0.998839
Target:  5'- -cGCGUcggGUCGacaGGCuUGGgCAUGGAGCc -3'
miRNA:   3'- gaCGCAa--UAGU---UCG-ACCgGUGCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 257777 0.76 0.865961
Target:  5'- uCU-CGUUGUCAagcugcggAGCUGGCCGaGAGGCa -3'
miRNA:   3'- -GAcGCAAUAGU--------UCGACCGGUgCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 155679 0.66 0.999472
Target:  5'- -aGuCGUgGUCAAGuCUaGGuCCACGggGUa -3'
miRNA:   3'- gaC-GCAaUAGUUC-GA-CC-GGUGCuuCG- -5'
10383 3' -50.9 NC_002687.1 + 224948 0.72 0.966386
Target:  5'- gUGCGUgcgGUCGAGCUGGagcCGGAGa -3'
miRNA:   3'- gACGCAa--UAGUUCGACCgguGCUUCg -5'
10383 3' -50.9 NC_002687.1 + 318566 0.67 0.998817
Target:  5'- aCUGaCGUc-UCAggagaugAGUUGGCCACGAcuuGCg -3'
miRNA:   3'- -GAC-GCAauAGU-------UCGACCGGUGCUu--CG- -5'
10383 3' -50.9 NC_002687.1 + 18637 0.66 0.999572
Target:  5'- -gGUGUga--AGGCagUGGCCAgGAGGCc -3'
miRNA:   3'- gaCGCAauagUUCG--ACCGGUgCUUCG- -5'
10383 3' -50.9 NC_002687.1 + 123278 0.66 0.999718
Target:  5'- -cGCGaguucAUCAAGCcGGCCuACGAgacgaucGGCg -3'
miRNA:   3'- gaCGCaa---UAGUUCGaCCGG-UGCU-------UCG- -5'
10383 3' -50.9 NC_002687.1 + 246606 0.7 0.989892
Target:  5'- aCUGUGga--CAAGCUGGCUuCG-AGCa -3'
miRNA:   3'- -GACGCaauaGUUCGACCGGuGCuUCG- -5'
10383 3' -50.9 NC_002687.1 + 33644 0.68 0.995959
Target:  5'- -cGCGgaagagacAGCUGGCaCACGggGUa -3'
miRNA:   3'- gaCGCaauagu--UCGACCG-GUGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.