miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10383 5' -62.3 NC_002687.1 + 17785 0.66 0.858026
Target:  5'- gCCGCUGCgGCUGCaacgcuuggcauugaCAUuCACCauACCGCUc -3'
miRNA:   3'- -GGCGACGgCGGCG---------------GUG-GUGG--UGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 315702 0.66 0.855227
Target:  5'- aCCGCcaGCCGCa-CCGaaucCUGCCGCCACg -3'
miRNA:   3'- -GGCGa-CGGCGgcGGU----GGUGGUGGUGg -5'
10383 5' -62.3 NC_002687.1 + 307322 0.66 0.855227
Target:  5'- gUGUUGuaucagguCCGUCGUCACCACUGCCuucguugauGCCg -3'
miRNA:   3'- gGCGAC--------GGCGGCGGUGGUGGUGG---------UGG- -5'
10383 5' -62.3 NC_002687.1 + 309122 0.66 0.855227
Target:  5'- -gGC-GUCGaCCGUCACCAgcuccccguCCACCACg -3'
miRNA:   3'- ggCGaCGGC-GGCGGUGGU---------GGUGGUGg -5'
10383 5' -62.3 NC_002687.1 + 299866 0.66 0.855227
Target:  5'- cUCGgaGUacaGCCGCUugACCACCuuGCCgACCu -3'
miRNA:   3'- -GGCgaCGg--CGGCGG--UGGUGG--UGG-UGG- -5'
10383 5' -62.3 NC_002687.1 + 72165 0.66 0.855227
Target:  5'- aUCGCUaucgagacGCCGUCGUCgAUCGCCGCgguauCACCc -3'
miRNA:   3'- -GGCGA--------CGGCGGCGG-UGGUGGUG-----GUGG- -5'
10383 5' -62.3 NC_002687.1 + 204551 0.66 0.855227
Target:  5'- aCCG-UGCUGuUCGgCACCGCCcCCGCg -3'
miRNA:   3'- -GGCgACGGC-GGCgGUGGUGGuGGUGg -5'
10383 5' -62.3 NC_002687.1 + 57447 0.66 0.855227
Target:  5'- gUCGggGCCGUCGgaCCACaACUACCAUCu -3'
miRNA:   3'- -GGCgaCGGCGGC--GGUGgUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 159215 0.66 0.848114
Target:  5'- aCGUUgGCCuuGUCGaCgGCCGCCGCCuCCg -3'
miRNA:   3'- gGCGA-CGG--CGGC-GgUGGUGGUGGuGG- -5'
10383 5' -62.3 NC_002687.1 + 276014 0.66 0.848114
Target:  5'- cCCGUU-CUGCUGCgACUGCCuCUACCc -3'
miRNA:   3'- -GGCGAcGGCGGCGgUGGUGGuGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 259902 0.66 0.848114
Target:  5'- -aGUUGCCGgCGCCGCgCAaCACgAUCg -3'
miRNA:   3'- ggCGACGGCgGCGGUG-GUgGUGgUGG- -5'
10383 5' -62.3 NC_002687.1 + 262820 0.66 0.848114
Target:  5'- -gGUUGuCCGCaCGCCGCUuuCCACCGu- -3'
miRNA:   3'- ggCGAC-GGCG-GCGGUGGu-GGUGGUgg -5'
10383 5' -62.3 NC_002687.1 + 242777 0.66 0.848114
Target:  5'- gCGauuuUGCCGCuCGCCACUucuUCAUCugCa -3'
miRNA:   3'- gGCg---ACGGCG-GCGGUGGu--GGUGGugG- -5'
10383 5' -62.3 NC_002687.1 + 177869 0.66 0.848114
Target:  5'- gUGgUGCCGgUGgcuuuCCAUCAgCACCACCg -3'
miRNA:   3'- gGCgACGGCgGC-----GGUGGUgGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 11890 0.66 0.840842
Target:  5'- aCGCUGCgcaGCCGCgUGCaCGCCcaguuucgcgACCACUg -3'
miRNA:   3'- gGCGACGg--CGGCG-GUG-GUGG----------UGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 69878 0.66 0.840842
Target:  5'- aCCGUcuUGUcugCGUCuaCACCGCUACCGCUc -3'
miRNA:   3'- -GGCG--ACG---GCGGcgGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 304922 0.66 0.840842
Target:  5'- aCGCU-CgGCCGaccagguucaUCACCAUgCACCACCg -3'
miRNA:   3'- gGCGAcGgCGGC----------GGUGGUG-GUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 281443 0.66 0.840842
Target:  5'- gUGUUGCguagauuccCGaCCGCUuuuuUCACCACCGCCc -3'
miRNA:   3'- gGCGACG---------GC-GGCGGu---GGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 67974 0.66 0.840842
Target:  5'- aUCGaCUGuCCGCaCGaCugCGCCGCCuCCu -3'
miRNA:   3'- -GGC-GAC-GGCG-GCgGugGUGGUGGuGG- -5'
10383 5' -62.3 NC_002687.1 + 11683 0.66 0.840842
Target:  5'- uUGCUGCUGCUGCaauUCACgCACUAUg -3'
miRNA:   3'- gGCGACGGCGGCGgu-GGUG-GUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.