miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10383 5' -62.3 NC_002687.1 + 224805 1.13 0.001225
Target:  5'- gCCGCUGCCGCCGCCACCACCACCACCa -3'
miRNA:   3'- -GGCGACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 11772 0.96 0.016588
Target:  5'- gCUGCUGCCGCUGCUGCCACCGCUACCg -3'
miRNA:   3'- -GGCGACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 223892 0.95 0.019261
Target:  5'- uUGCUGUCGCUGCCAUCACCACCACCa -3'
miRNA:   3'- gGCGACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 227180 0.94 0.02236
Target:  5'- aCCGCUccGCCaCCGCCACCGCCACCGCCa -3'
miRNA:   3'- -GGCGA--CGGcGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 10690 0.93 0.027955
Target:  5'- aCUGCcacaacUGCCGCCGCCACUGCCGCCGCCa -3'
miRNA:   3'- -GGCG------ACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 224562 0.91 0.036691
Target:  5'- aCCGCcaccGCCaCCGCCACCGCCACCGCCa -3'
miRNA:   3'- -GGCGa---CGGcGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 307269 0.9 0.043592
Target:  5'- aCCGCcGCCGCCcguGCCAgCACCACCACCg -3'
miRNA:   3'- -GGCGaCGGCGG---CGGUgGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 130356 0.89 0.050505
Target:  5'- uUCGCcaccGCCaCCGCCACCACCACCACCg -3'
miRNA:   3'- -GGCGa---CGGcGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 224532 0.88 0.05435
Target:  5'- aCCagcaCUGCCcCCGCCACCGCCACCGCCa -3'
miRNA:   3'- -GGc---GACGGcGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 10402 0.87 0.069328
Target:  5'- aCUGCUGCUGCUGCUGCCACCACUuCCg -3'
miRNA:   3'- -GGCGACGGCGGCGGUGGUGGUGGuGG- -5'
10383 5' -62.3 NC_002687.1 + 11682 0.86 0.074549
Target:  5'- cCUGCUGCCGCCGCUACUGCUGCUGCUg -3'
miRNA:   3'- -GGCGACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 281320 0.86 0.080147
Target:  5'- gCCGCcGCUGCCGCCACCcagGCCcCCGCCg -3'
miRNA:   3'- -GGCGaCGGCGGCGGUGG---UGGuGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 291345 0.86 0.0821
Target:  5'- gCCGCUGCUGCUGCUGCUGCCGCUGCUg -3'
miRNA:   3'- -GGCGACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 77737 0.85 0.084099
Target:  5'- gUGCUGCCGUuucagaCGCCGCCGCCACgGCCg -3'
miRNA:   3'- gGCGACGGCG------GCGGUGGUGGUGgUGG- -5'
10383 5' -62.3 NC_002687.1 + 72919 0.85 0.088237
Target:  5'- gCCGaC-GCCGCCGCCGCCGacaCACCGCCg -3'
miRNA:   3'- -GGC-GaCGGCGGCGGUGGUg--GUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 69410 0.85 0.092568
Target:  5'- aCCGCcgacaCCaCCGCCACCGCCGCCACCa -3'
miRNA:   3'- -GGCGac---GGcGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 307442 0.85 0.092568
Target:  5'- aUCGCUGCCGUCaCCGCCGUCACCGCCg -3'
miRNA:   3'- -GGCGACGGCGGcGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 292430 0.82 0.128984
Target:  5'- cCCGUgcGCCGCgGCCGCCACCGCUuCCa -3'
miRNA:   3'- -GGCGa-CGGCGgCGGUGGUGGUGGuGG- -5'
10383 5' -62.3 NC_002687.1 + 208546 0.82 0.128984
Target:  5'- gCUGCUGCUGCUGCUGCUGCUGCUACCg -3'
miRNA:   3'- -GGCGACGGCGGCGGUGGUGGUGGUGG- -5'
10383 5' -62.3 NC_002687.1 + 282426 0.81 0.158982
Target:  5'- gCCGCcGCUGCUGCCACUacggccccuGCCGCCGCUg -3'
miRNA:   3'- -GGCGaCGGCGGCGGUGG---------UGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.