miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10384 3' -59.4 NC_002687.1 + 17369 0.66 0.920275
Target:  5'- -aGGCAGU-CCGGCGGCGUUuugcgCAGc -3'
miRNA:   3'- ggUCGUCAgGGUCGCCGCGGua---GUCa -5'
10384 3' -59.4 NC_002687.1 + 300157 0.66 0.919751
Target:  5'- gUAGCGGUgaCCCGGCaggugauaacuuuGGCGCCAUUu-- -3'
miRNA:   3'- gGUCGUCA--GGGUCG-------------CCGCGGUAGuca -5'
10384 3' -59.4 NC_002687.1 + 107044 0.66 0.914935
Target:  5'- cUCAGCAcuGUCCCGGCGGUugugcgaaGCgCAUCc-- -3'
miRNA:   3'- -GGUCGU--CAGGGUCGCCG--------CG-GUAGuca -5'
10384 3' -59.4 NC_002687.1 + 291302 0.66 0.909387
Target:  5'- aCCucgcGCGGUgCCCAGCGGCcgcgagGCUGUCGu- -3'
miRNA:   3'- -GGu---CGUCA-GGGUCGCCG------CGGUAGUca -5'
10384 3' -59.4 NC_002687.1 + 307053 0.66 0.903634
Target:  5'- cCCAGCAGgcuuguugggCgCAcGCGGCGCCGUa--- -3'
miRNA:   3'- -GGUCGUCa---------GgGU-CGCCGCGGUAguca -5'
10384 3' -59.4 NC_002687.1 + 26965 0.67 0.89152
Target:  5'- aCCAGCAG-CCCA-CGuGCGCCucCGGa -3'
miRNA:   3'- -GGUCGUCaGGGUcGC-CGCGGuaGUCa -5'
10384 3' -59.4 NC_002687.1 + 284370 0.67 0.89152
Target:  5'- aCAGCA--CCagaGGCGGCGCguUCAGc -3'
miRNA:   3'- gGUCGUcaGGg--UCGCCGCGguAGUCa -5'
10384 3' -59.4 NC_002687.1 + 17924 0.67 0.878612
Target:  5'- -aGGCAG-CCCGGCGGCGUUuugCAc- -3'
miRNA:   3'- ggUCGUCaGGGUCGCCGCGGua-GUca -5'
10384 3' -59.4 NC_002687.1 + 226856 0.67 0.878612
Target:  5'- ------nUCCCAGCGGCGCCAccgaaCAGUc -3'
miRNA:   3'- ggucgucAGGGUCGCCGCGGUa----GUCA- -5'
10384 3' -59.4 NC_002687.1 + 85804 0.67 0.878612
Target:  5'- aCCGGUGGgaCCCGGCGGC-CCcUUAGg -3'
miRNA:   3'- -GGUCGUCa-GGGUCGCCGcGGuAGUCa -5'
10384 3' -59.4 NC_002687.1 + 200771 0.67 0.871869
Target:  5'- aCGGCaucGGgacaUCCGGCGGCGUaCAUCAGa -3'
miRNA:   3'- gGUCG---UCa---GGGUCGCCGCG-GUAGUCa -5'
10384 3' -59.4 NC_002687.1 + 215721 0.67 0.864939
Target:  5'- uCgAGCAGUCgCAcGUGGCaucGUCGUCGGUg -3'
miRNA:   3'- -GgUCGUCAGgGU-CGCCG---CGGUAGUCA- -5'
10384 3' -59.4 NC_002687.1 + 72553 0.67 0.857826
Target:  5'- cUCGGCGGUgUgucggCGGCGGCGgCGUCGGc -3'
miRNA:   3'- -GGUCGUCAgG-----GUCGCCGCgGUAGUCa -5'
10384 3' -59.4 NC_002687.1 + 85320 0.68 0.827651
Target:  5'- cCCGuCGGUCCCGuCGGUcCCAUCGGUc -3'
miRNA:   3'- -GGUcGUCAGGGUcGCCGcGGUAGUCA- -5'
10384 3' -59.4 NC_002687.1 + 226935 0.68 0.827651
Target:  5'- cCCAuuGGUCCCAuCGGUcCCAUCGGUn -3'
miRNA:   3'- -GGUcgUCAGGGUcGCCGcGGUAGUCA- -5'
10384 3' -59.4 NC_002687.1 + 17591 0.69 0.803374
Target:  5'- -aGGCAG-CCCGGCGGCGUUuugcaCAGa -3'
miRNA:   3'- ggUCGUCaGGGUCGCCGCGGua---GUCa -5'
10384 3' -59.4 NC_002687.1 + 225481 0.69 0.795002
Target:  5'- uUCAGCGGcaUCCC--CGGUGCCAUCAa- -3'
miRNA:   3'- -GGUCGUC--AGGGucGCCGCGGUAGUca -5'
10384 3' -59.4 NC_002687.1 + 8642 0.7 0.714767
Target:  5'- gCCAGCAGcaUCCgaCAGCuGCGCCAUaGGUa -3'
miRNA:   3'- -GGUCGUC--AGG--GUCGcCGCGGUAgUCA- -5'
10384 3' -59.4 NC_002687.1 + 17702 0.7 0.705445
Target:  5'- -aGGCAG-CCCGGCGGCGUUuugcgCAGa -3'
miRNA:   3'- ggUCGUCaGGGUCGCCGCGGua---GUCa -5'
10384 3' -59.4 NC_002687.1 + 60816 0.7 0.705445
Target:  5'- cUCGGCAGUCCCucgucgAGCGGCGacaGUgAGUu -3'
miRNA:   3'- -GGUCGUCAGGG------UCGCCGCgg-UAgUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.