miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10384 5' -52.2 NC_002687.1 + 154241 0.66 0.999393
Target:  5'- aCGCCGAc--GUuuGCUAcGGCgaagGGGg -3'
miRNA:   3'- gGUGGCUuguCAggCGAUuUCGa---CCC- -5'
10384 5' -52.2 NC_002687.1 + 299431 0.66 0.999393
Target:  5'- gC-CCGGAgAcGUCgauuugCGUUGAAGCUGGGa -3'
miRNA:   3'- gGuGGCUUgU-CAG------GCGAUUUCGACCC- -5'
10384 5' -52.2 NC_002687.1 + 94833 0.66 0.999393
Target:  5'- gCCAUCGGaaACGGUCUGCaUGAaacGGaaGGGa -3'
miRNA:   3'- -GGUGGCU--UGUCAGGCG-AUU---UCgaCCC- -5'
10384 5' -52.2 NC_002687.1 + 29865 0.66 0.999262
Target:  5'- -aGgCGAGCAGUuuGCgGAGGCUGuGa -3'
miRNA:   3'- ggUgGCUUGUCAggCGaUUUCGAC-Cc -5'
10384 5' -52.2 NC_002687.1 + 209181 0.66 0.999106
Target:  5'- aCCACCGucgucACGGUCgucaCUGAGGUcccUGGGg -3'
miRNA:   3'- -GGUGGCu----UGUCAGgc--GAUUUCG---ACCC- -5'
10384 5' -52.2 NC_002687.1 + 205431 0.66 0.999106
Target:  5'- aCCGCCGucgUAGUcaCCGCUGAAG--GGGu -3'
miRNA:   3'- -GGUGGCuu-GUCA--GGCGAUUUCgaCCC- -5'
10384 5' -52.2 NC_002687.1 + 246363 0.66 0.998924
Target:  5'- -aACCGAGUAcUCCGC-GAAGuCUGGGa -3'
miRNA:   3'- ggUGGCUUGUcAGGCGaUUUC-GACCC- -5'
10384 5' -52.2 NC_002687.1 + 310795 0.66 0.998924
Target:  5'- -uGCUGGACAGUgCGggAAggggGGUUGGGg -3'
miRNA:   3'- ggUGGCUUGUCAgGCgaUU----UCGACCC- -5'
10384 5' -52.2 NC_002687.1 + 171888 0.66 0.998924
Target:  5'- gUCGCCGAACuuGagCGCaAGAGgaGGGu -3'
miRNA:   3'- -GGUGGCUUGu-CagGCGaUUUCgaCCC- -5'
10384 5' -52.2 NC_002687.1 + 102041 0.66 0.998904
Target:  5'- gCGCCGGACgaccagggucugaAGUUCGC-GAAGUuuaUGGGa -3'
miRNA:   3'- gGUGGCUUG-------------UCAGGCGaUUUCG---ACCC- -5'
10384 5' -52.2 NC_002687.1 + 332028 0.66 0.998687
Target:  5'- gCCACCGAcaccgacACuGUCgGUguccGAGCUGGu -3'
miRNA:   3'- -GGUGGCU-------UGuCAGgCGau--UUCGACCc -5'
10384 5' -52.2 NC_002687.1 + 122467 0.67 0.998462
Target:  5'- aCCGCCcuggguccagGAGCAuUCUGUgcGAGCUGGa -3'
miRNA:   3'- -GGUGG----------CUUGUcAGGCGauUUCGACCc -5'
10384 5' -52.2 NC_002687.1 + 260278 0.67 0.998462
Target:  5'- gCCACC-AACAGUUCGUUcAAGCUa-- -3'
miRNA:   3'- -GGUGGcUUGUCAGGCGAuUUCGAccc -5'
10384 5' -52.2 NC_002687.1 + 146038 0.67 0.998462
Target:  5'- aCGgCGcAGCAGUCCGCcaggggccgGAAGCUGa- -3'
miRNA:   3'- gGUgGC-UUGUCAGGCGa--------UUUCGACcc -5'
10384 5' -52.2 NC_002687.1 + 57481 0.67 0.998435
Target:  5'- gCCGCCGAuGCAGcaucCCGUUGAcgggucuAGCgucGGGg -3'
miRNA:   3'- -GGUGGCU-UGUCa---GGCGAUU-------UCGa--CCC- -5'
10384 5' -52.2 NC_002687.1 + 104009 0.67 0.998174
Target:  5'- aCACCGAAgUAGgCCGCUagaaGAGGCUuGGc -3'
miRNA:   3'- gGUGGCUU-GUCaGGCGA----UUUCGAcCC- -5'
10384 5' -52.2 NC_002687.1 + 298087 0.67 0.997843
Target:  5'- -gACCGGGguGUUCGCcgu-GUUGGGg -3'
miRNA:   3'- ggUGGCUUguCAGGCGauuuCGACCC- -5'
10384 5' -52.2 NC_002687.1 + 251500 0.67 0.997843
Target:  5'- aCACCGucAACcGUCgGCUGAcguccaGGCUGGu -3'
miRNA:   3'- gGUGGC--UUGuCAGgCGAUU------UCGACCc -5'
10384 5' -52.2 NC_002687.1 + 296703 0.67 0.997027
Target:  5'- gCACCGAcgaAGUgUGC---AGCUGGGg -3'
miRNA:   3'- gGUGGCUug-UCAgGCGauuUCGACCC- -5'
10384 5' -52.2 NC_002687.1 + 243701 0.67 0.997027
Target:  5'- aCCACCGAccucgcACAGUgC-CUAGAGgUGGc -3'
miRNA:   3'- -GGUGGCU------UGUCAgGcGAUUUCgACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.