miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 3' -53.5 NC_002687.1 + 113663 0.66 0.996911
Target:  5'- -cCGUCGGCuGCUcGGccUGUCCGug-CGGg -3'
miRNA:   3'- gaGCAGCCG-CGA-CU--ACAGGCuaaGUC- -5'
10385 3' -53.5 NC_002687.1 + 180623 0.66 0.996911
Target:  5'- uCUCGUCGGuCGC-GAUGcUCUGAaugacUCGGu -3'
miRNA:   3'- -GAGCAGCC-GCGaCUAC-AGGCUa----AGUC- -5'
10385 3' -53.5 NC_002687.1 + 60858 0.66 0.996863
Target:  5'- gCUCuGUCGGCcaGCUGGcgaugcgUGcgCCGAUUCAu -3'
miRNA:   3'- -GAG-CAGCCG--CGACU-------ACa-GGCUAAGUc -5'
10385 3' -53.5 NC_002687.1 + 254338 0.66 0.995826
Target:  5'- -gCGUCGGcCGUcaUGGUGUCCGccUCGu -3'
miRNA:   3'- gaGCAGCC-GCG--ACUACAGGCuaAGUc -5'
10385 3' -53.5 NC_002687.1 + 47528 0.68 0.989367
Target:  5'- cCUCGggCGGCGCaGAUGUgCCGGc-CAGc -3'
miRNA:   3'- -GAGCa-GCCGCGaCUACA-GGCUaaGUC- -5'
10385 3' -53.5 NC_002687.1 + 249573 0.68 0.986529
Target:  5'- --aGUCGGCGCcguguagaucgaUGAgGUCCGGggcgUCGGa -3'
miRNA:   3'- gagCAGCCGCG------------ACUaCAGGCUa---AGUC- -5'
10385 3' -53.5 NC_002687.1 + 97554 0.69 0.971904
Target:  5'- -aUGUCGGCGgUGuUGUCCGuuUUCAa -3'
miRNA:   3'- gaGCAGCCGCgACuACAGGCu-AAGUc -5'
10385 3' -53.5 NC_002687.1 + 263621 0.69 0.969128
Target:  5'- uCUCGagcUUGGCGCUGGUGUaCUGA--CAGa -3'
miRNA:   3'- -GAGC---AGCCGCGACUACA-GGCUaaGUC- -5'
10385 3' -53.5 NC_002687.1 + 207150 0.7 0.966162
Target:  5'- uCUCGaCGGCGUgugGAcucUGUCCGGaUCGGc -3'
miRNA:   3'- -GAGCaGCCGCGa--CU---ACAGGCUaAGUC- -5'
10385 3' -53.5 NC_002687.1 + 252925 0.71 0.93969
Target:  5'- uUUGUCGG-GCUGGcagcgguaUGUCCGAcUCGGg -3'
miRNA:   3'- gAGCAGCCgCGACU--------ACAGGCUaAGUC- -5'
10385 3' -53.5 NC_002687.1 + 227350 1.09 0.012601
Target:  5'- cCUCGUCGGCGCUGAUGUCCGAUUCAGu -3'
miRNA:   3'- -GAGCAGCCGCGACUACAGGCUAAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.