miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 200606 0.66 0.898636
Target:  5'- aCAUUGAgCACCGCaagaGCCGcGCGGUCGuCg -3'
miRNA:   3'- -GUGGCU-GUGGUGg---UGGC-CGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 252344 0.66 0.898636
Target:  5'- uGCCGAgGaCGCCGCgCGaCGGCCGAUc -3'
miRNA:   3'- gUGGCUgUgGUGGUG-GCcGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 293274 0.66 0.898636
Target:  5'- aGCUGGCugCACgugcgGCUGGCuucaaGGCCGAUg -3'
miRNA:   3'- gUGGCUGugGUGg----UGGCCG-----UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 40077 0.66 0.898636
Target:  5'- uGCUGAUGCguuGgCACCGGCuucgagaaggguAGCCGACa -3'
miRNA:   3'- gUGGCUGUGg--UgGUGGCCG------------UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 13319 0.66 0.89804
Target:  5'- uGCCGGCGCUGCUgugAUCGGCuGCgcuccugCGACg -3'
miRNA:   3'- gUGGCUGUGGUGG---UGGCCGuCG-------GCUG- -5'
10385 5' -60.6 NC_002687.1 + 225419 0.66 0.892587
Target:  5'- -uCCGGCugCAgCC-CCaGCuGCCGGCa -3'
miRNA:   3'- guGGCUGugGU-GGuGGcCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279068 0.66 0.892587
Target:  5'- gGCCucaaacuCGCCGCCAUCGGCuguGuCUGGCg -3'
miRNA:   3'- gUGGcu-----GUGGUGGUGGCCGu--C-GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 100645 0.66 0.892587
Target:  5'- aCAUCGGCAUCAacgucgaCACCGGU-GCCGcCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCGuCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 330857 0.66 0.892587
Target:  5'- aCGCUGACGCCACagcagGCCcGCucGCUGGCc -3'
miRNA:   3'- -GUGGCUGUGGUGg----UGGcCGu-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 210290 0.66 0.892587
Target:  5'- gCACCacCGCCACCACgGGCAccacuGCCa-- -3'
miRNA:   3'- -GUGGcuGUGGUGGUGgCCGU-----CGGcug -5'
10385 5' -60.6 NC_002687.1 + 72203 0.66 0.886343
Target:  5'- uUACCGAC-UgGCCAggcCCGGCGgauGCCGAa -3'
miRNA:   3'- -GUGGCUGuGgUGGU---GGCCGU---CGGCUg -5'
10385 5' -60.6 NC_002687.1 + 41871 0.66 0.886343
Target:  5'- aCAUCGACACgGCUugCGGCu-CgGGCu -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGucGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 224520 0.66 0.886343
Target:  5'- -cCCGcCACCGCCACCGcCAGCg--- -3'
miRNA:   3'- guGGCuGUGGUGGUGGCcGUCGgcug -5'
10385 5' -60.6 NC_002687.1 + 249199 0.66 0.880561
Target:  5'- -uCCGACGCCccggaccucaucgauCUACaCGGC-GCCGACu -3'
miRNA:   3'- guGGCUGUGGu--------------GGUG-GCCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 297354 0.66 0.879909
Target:  5'- -uCCGGCcCCAUCcCCGGCGGuuGuCg -3'
miRNA:   3'- guGGCUGuGGUGGuGGCCGUCggCuG- -5'
10385 5' -60.6 NC_002687.1 + 122680 0.66 0.879909
Target:  5'- cCGCCGugACUuCgACCGGUAGa-GACa -3'
miRNA:   3'- -GUGGCugUGGuGgUGGCCGUCggCUG- -5'
10385 5' -60.6 NC_002687.1 + 80046 0.66 0.879909
Target:  5'- --aCGGCACaauuuCCAUCGGCGuCCGGCa -3'
miRNA:   3'- gugGCUGUGgu---GGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 125502 0.66 0.879909
Target:  5'- uCAUCGACACgGacuCCGCCGGCucuuGCCc-- -3'
miRNA:   3'- -GUGGCUGUGgU---GGUGGCCGu---CGGcug -5'
10385 5' -60.6 NC_002687.1 + 278979 0.66 0.873288
Target:  5'- cCAgCGAUgcucCCACCAgCGGCAGUgGAa -3'
miRNA:   3'- -GUgGCUGu---GGUGGUgGCCGUCGgCUg -5'
10385 5' -60.6 NC_002687.1 + 279093 0.66 0.873288
Target:  5'- cUACCaGGCGCUcCC-CCGGCAccaCCGACa -3'
miRNA:   3'- -GUGG-CUGUGGuGGuGGCCGUc--GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.