Results 41 - 60 of 133 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 141767 | 0.67 | 0.822063 |
Target: 5'- gACuCGGCgAUCGCCGCCGGCAaCCuuGGCa -3' miRNA: 3'- gUG-GCUG-UGGUGGUGGCCGUcGG--CUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 241452 | 0.67 | 0.814111 |
Target: 5'- gCACCGuCGCCAagaauuCCGCCaGCuuGUCGACg -3' miRNA: 3'- -GUGGCuGUGGU------GGUGGcCGu-CGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 279528 | 0.67 | 0.829867 |
Target: 5'- -uCCGGCACCGCCGCUGcGCAcGCg--- -3' miRNA: 3'- guGGCUGUGGUGGUGGC-CGU-CGgcug -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 101593 | 0.67 | 0.845011 |
Target: 5'- cCACCGugAgCGCCgaagACCGcgccaaguacGCGGCCGAa -3' miRNA: 3'- -GUGGCugUgGUGG----UGGC----------CGUCGGCUg -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 89956 | 0.67 | 0.837518 |
Target: 5'- uCAUCGuCAUCucuGCCGCUGGCggAGUCGGCa -3' miRNA: 3'- -GUGGCuGUGG---UGGUGGCCG--UCGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 3229 | 0.67 | 0.837518 |
Target: 5'- uGCCGACGaaggCGCCAUCGGCGcccucgagaccGCCG-Ca -3' miRNA: 3'- gUGGCUGUg---GUGGUGGCCGU-----------CGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 161233 | 0.67 | 0.829867 |
Target: 5'- uCACCGugGCCGaaGCCGaGUAGUCG-Cu -3' miRNA: 3'- -GUGGCugUGGUggUGGC-CGUCGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 225340 | 0.67 | 0.814111 |
Target: 5'- cCACCGccgcuguccccaACACCACCccccucuCCGGCuccAGCuCGACc -3' miRNA: 3'- -GUGGC------------UGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 278881 | 0.67 | 0.814111 |
Target: 5'- uCGCUGACACC-CUucgaauacCCGGCAGCCc-- -3' miRNA: 3'- -GUGGCUGUGGuGGu-------GGCCGUCGGcug -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 297365 | 0.67 | 0.811698 |
Target: 5'- gCACagcgaGACAUCGCCACCGaggacgcgcgcgauGguGUCGGCg -3' miRNA: 3'- -GUGg----CUGUGGUGGUGGC--------------CguCGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 57233 | 0.67 | 0.845011 |
Target: 5'- aACCGGCGCCGCgggcaUACaCGcGCAGgCGAUg -3' miRNA: 3'- gUGGCUGUGGUG-----GUG-GC-CGUCgGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 282306 | 0.67 | 0.85234 |
Target: 5'- -cCCGGCACCGCC-CCuGCuccuGCCG-Cg -3' miRNA: 3'- guGGCUGUGGUGGuGGcCGu---CGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 109424 | 0.67 | 0.820484 |
Target: 5'- gCGCCGAacuuguacgaCGCCAUCGGCGucagcGCCGAUg -3' miRNA: 3'- -GUGGCUgug-------GUGGUGGCCGU-----CGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 72541 | 0.67 | 0.845011 |
Target: 5'- gCACUGGCACUGCuCGgCGGUGuGUCGGCg -3' miRNA: 3'- -GUGGCUGUGGUG-GUgGCCGU-CGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 70341 | 0.67 | 0.845011 |
Target: 5'- gACCGccagaGCCGCCAgCGGCAuGUaCGACa -3' miRNA: 3'- gUGGCug---UGGUGGUgGCCGU-CG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 227214 | 0.68 | 0.763689 |
Target: 5'- aCAUCGGCGCa--CACCGGCAGguCgGACg -3' miRNA: 3'- -GUGGCUGUGgugGUGGCCGUC--GgCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 38504 | 0.68 | 0.763689 |
Target: 5'- -uCCGAUguGCCGCCACCGGU-GCCcucGAUa -3' miRNA: 3'- guGGCUG--UGGUGGUGGCCGuCGG---CUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226446 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 59406 | 0.68 | 0.789442 |
Target: 5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3' miRNA: 3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226074 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home