miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 38504 0.68 0.763689
Target:  5'- -uCCGAUguGCCGCCACCGGU-GCCcucGAUa -3'
miRNA:   3'- guGGCUG--UGGUGGUGGCCGuCGG---CUG- -5'
10385 5' -60.6 NC_002687.1 + 224151 0.68 0.772382
Target:  5'- gCGCUGGCGCUGgCGCUGGCGG-UGGCg -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 315928 0.68 0.789442
Target:  5'- cCACCGcCAUCAUgACCGGaucCCGACa -3'
miRNA:   3'- -GUGGCuGUGGUGgUGGCCgucGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 59406 0.68 0.789442
Target:  5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3'
miRNA:   3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 226074 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 226632 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 208351 0.68 0.780969
Target:  5'- -cCCGACGCCAUC-CCGGaAGuCCGAg -3'
miRNA:   3'- guGGCUGUGGUGGuGGCCgUC-GGCUg -5'
10385 5' -60.6 NC_002687.1 + 256018 0.68 0.772382
Target:  5'- cCACCGuCAUCACCAcacggacuucccCCGGCGGCgaaGAa -3'
miRNA:   3'- -GUGGCuGUGGUGGU------------GGCCGUCGg--CUg -5'
10385 5' -60.6 NC_002687.1 + 297717 0.68 0.772382
Target:  5'- uCACCGACA--ACCGCCGGggauggGGCCGGa -3'
miRNA:   3'- -GUGGCUGUggUGGUGGCCg-----UCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 313611 0.68 0.763689
Target:  5'- gACaaACACCACCA-CGaCAGCCGACg -3'
miRNA:   3'- gUGgcUGUGGUGGUgGCcGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 226446 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 159198 0.68 0.797795
Target:  5'- gGCCGcCGCCuCCgggcuuucgACCGGCGGCgaCGGCg -3'
miRNA:   3'- gUGGCuGUGGuGG---------UGGCCGUCG--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 96380 0.68 0.789442
Target:  5'- uGCCGGCGCCGCgGaugaaaGGUGuGCCGACc -3'
miRNA:   3'- gUGGCUGUGGUGgUgg----CCGU-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224750 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224630 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 226758 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccuguCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226386 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226200 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 131498 0.69 0.713379
Target:  5'- gGCCGAUGgCGuuACCGGCGugguggaauauagcuGCCGACa -3'
miRNA:   3'- gUGGCUGUgGUggUGGCCGU---------------CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 88562 0.69 0.754897
Target:  5'- aGCaCGACACCugugACCAUugCGGCAGCCccGAUa -3'
miRNA:   3'- gUG-GCUGUGG----UGGUG--GCCGUCGG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.