miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 226386 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226758 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccuguCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 224630 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224750 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 7235 0.69 0.746013
Target:  5'- uCGCUGGugUCACCACUGGCA-CCGGCu -3'
miRNA:   3'- -GUGGCUguGGUGGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 103005 0.69 0.737944
Target:  5'- gCGCCGACACCaagGCCGCCaaggccacgaaggcuGCAGCCa-- -3'
miRNA:   3'- -GUGGCUGUGG---UGGUGGc--------------CGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 302856 0.69 0.752241
Target:  5'- cUACCGACccuaggaccucgugACCcagcgugugaGCCGCCGaauucccaGCGGCCGACa -3'
miRNA:   3'- -GUGGCUG--------------UGG----------UGGUGGC--------CGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 226200 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 224690 0.69 0.71888
Target:  5'- cCAUCGcCACCACCACCaGCAcuGCCa-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 81200 0.69 0.7097
Target:  5'- gGCCucgGGCACCGCUacGCCGGCAaCgGACg -3'
miRNA:   3'- gUGG---CUGUGGUGG--UGGCCGUcGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 297986 0.69 0.737044
Target:  5'- gUugCGGcCGCCACCGCUuccgacuggcgaGGCGGCCG-Cu -3'
miRNA:   3'- -GugGCU-GUGGUGGUGG------------CCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 88562 0.69 0.754897
Target:  5'- aGCaCGACACCugugACCAUugCGGCAGCCccGAUa -3'
miRNA:   3'- gUG-GCUGUGG----UGGUG--GCCGUCGG--CUG- -5'
10385 5' -60.6 NC_002687.1 + 28986 0.69 0.746013
Target:  5'- --aUGACACCgGCCGCCGaGCAccuGCCGAg -3'
miRNA:   3'- gugGCUGUGG-UGGUGGC-CGU---CGGCUg -5'
10385 5' -60.6 NC_002687.1 + 39059 0.69 0.746013
Target:  5'- cCAUCGAUGCUACCACgGGUgacguAGCCGu- -3'
miRNA:   3'- -GUGGCUGUGGUGGUGgCCG-----UCGGCug -5'
10385 5' -60.6 NC_002687.1 + 226014 0.69 0.746013
Target:  5'- cCGCCcACGCCACCccccuguCCGGCuccAGCuCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226572 0.69 0.746013
Target:  5'- cCGCCcACGCCACCccccuguCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 41688 0.69 0.746013
Target:  5'- aCAUCGACACgGCUugCGGCucgcgcuucuCCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGuc--------GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 212719 0.69 0.746013
Target:  5'- gACCaaGACuGCCACCACCG-CuGUCGACg -3'
miRNA:   3'- gUGG--CUG-UGGUGGUGGCcGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 291262 0.69 0.71888
Target:  5'- gGCCGACugCACUGCCgaagugagccagGGCAGCUa-- -3'
miRNA:   3'- gUGGCUGugGUGGUGG------------CCGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 131498 0.69 0.713379
Target:  5'- gGCCGAUGgCGuuACCGGCGugguggaauauagcuGCCGACa -3'
miRNA:   3'- gUGGCUGUgGUggUGGCCGU---------------CGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.