miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 227315 1.09 0.00262
Target:  5'- cCACCGACACCACCACCGGCAGCCGACg -3'
miRNA:   3'- -GUGGCUGUGGUGGUGGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 227165 0.88 0.065898
Target:  5'- cCACCGcCACCGCCACCGGCA-CCGGCa -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 164292 0.84 0.115708
Target:  5'- gCAUCGGCACCGgCACCGGCAuGUCGACa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGU-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 97805 0.8 0.20354
Target:  5'- cCACCGGCACCaucggcACCGCUGGCAcuGCUGGCa -3'
miRNA:   3'- -GUGGCUGUGG------UGGUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 23714 0.79 0.233132
Target:  5'- cCGCCGACGCC-CCuCCGGCAucGCUGGCg -3'
miRNA:   3'- -GUGGCUGUGGuGGuGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 25201 0.78 0.289774
Target:  5'- gACCGACgcguuggACCACaaaacuCGCCGGCAGCCGAa -3'
miRNA:   3'- gUGGCUG-------UGGUG------GUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 225212 0.78 0.296694
Target:  5'- uGCCGGCGCCGCCGCguCGGCGGCucucCGAUc -3'
miRNA:   3'- gUGGCUGUGGUGGUG--GCCGUCG----GCUG- -5'
10385 5' -60.6 NC_002687.1 + 72920 0.77 0.309603
Target:  5'- uGCCGACGCCGCCGCC----GCCGACa -3'
miRNA:   3'- gUGGCUGUGGUGGUGGccguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 89589 0.77 0.309603
Target:  5'- uGCCGACuCCGCCAgCGGCAGagaUGACg -3'
miRNA:   3'- gUGGCUGuGGUGGUgGCCGUCg--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 224855 0.77 0.329762
Target:  5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 227117 0.76 0.350872
Target:  5'- uCACCGcUACCACCACCGccGCuGCCGAg -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGC--CGuCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 309224 0.76 0.350872
Target:  5'- cCGCUGACGCCcccACCACCGaGCAGCgGGa -3'
miRNA:   3'- -GUGGCUGUGG---UGGUGGC-CGUCGgCUg -5'
10385 5' -60.6 NC_002687.1 + 315673 0.76 0.353758
Target:  5'- cCACCGGCACCaucggcaccaucggcACCACCGcCAGCCGcACc -3'
miRNA:   3'- -GUGGCUGUGG---------------UGGUGGCcGUCGGC-UG- -5'
10385 5' -60.6 NC_002687.1 + 69409 0.76 0.372925
Target:  5'- cCGCCGACACCACCGCCaccGCcGCCa-- -3'
miRNA:   3'- -GUGGCUGUGGUGGUGGc--CGuCGGcug -5'
10385 5' -60.6 NC_002687.1 + 281319 0.75 0.411716
Target:  5'- cCGCCGcUGCCGCCACCcaGGCccccGCCGACg -3'
miRNA:   3'- -GUGGCuGUGGUGGUGG--CCGu---CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 21111 0.75 0.411716
Target:  5'- aGuuGACAUCGgCACCGGCAGCCa-- -3'
miRNA:   3'- gUggCUGUGGUgGUGGCCGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 47772 0.74 0.444489
Target:  5'- gGCCGGCACaccugCGCCACCGGaggcugucccccCAGUCGGCa -3'
miRNA:   3'- gUGGCUGUG-----GUGGUGGCC------------GUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 210341 0.74 0.447847
Target:  5'- cCACCGGCACCacgggcaccaucugcACCACCGGCAccaCgGGCa -3'
miRNA:   3'- -GUGGCUGUGG---------------UGGUGGCCGUc--GgCUG- -5'
10385 5' -60.6 NC_002687.1 + 307283 0.74 0.452909
Target:  5'- uGCCaGCACCACCACCGccaccGCcGCCGAUc -3'
miRNA:   3'- gUGGcUGUGGUGGUGGC-----CGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 87789 0.72 0.559796
Target:  5'- gCACCGguuGCACCGgCAuCUGGUAGCCGGg -3'
miRNA:   3'- -GUGGC---UGUGGUgGU-GGCCGUCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.