miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 158825 0.72 0.563505
Target:  5'- cCGCCGuCGCCGCCggucgaaagcccggaGgCGGCGGCCGuCg -3'
miRNA:   3'- -GUGGCuGUGGUGG---------------UgGCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 106638 0.72 0.569081
Target:  5'- gCACCGACACCAuguCCACUcGCgGGUCGAUg -3'
miRNA:   3'- -GUGGCUGUGGU---GGUGGcCG-UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 78068 0.72 0.578403
Target:  5'- aACCcGCACCAUCAUucgCGGCGGCCG-Ca -3'
miRNA:   3'- gUGGcUGUGGUGGUG---GCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 224546 0.71 0.597141
Target:  5'- cCACCGcCACCGCCACCaGCAcuGCCc-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 240200 0.71 0.615965
Target:  5'- uGCCaGCAuCCGCCG-CGGCGGCCGGa -3'
miRNA:   3'- gUGGcUGU-GGUGGUgGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 3631 0.71 0.625396
Target:  5'- aCACCGcacuACACUucGCCAUCGGUGGUCGAa -3'
miRNA:   3'- -GUGGC----UGUGG--UGGUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 307361 0.71 0.634832
Target:  5'- uGCCGuCACCAUCGCuguCGGCGccucGCCGAUg -3'
miRNA:   3'- gUGGCuGUGGUGGUG---GCCGU----CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 292435 0.71 0.638606
Target:  5'- gCGCCGcgGCCGCCACCgcuuccaguuggcgaGGCGGCCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUGGUGG---------------CCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 130366 0.71 0.644265
Target:  5'- cCACCGccacCACCACCACCGcCAGCU-ACa -3'
miRNA:   3'- -GUGGCu---GUGGUGGUGGCcGUCGGcUG- -5'
10385 5' -60.6 NC_002687.1 + 159948 0.7 0.65369
Target:  5'- aGCCGGgGCgGCCAa-GGCAGCCGcCg -3'
miRNA:   3'- gUGGCUgUGgUGGUggCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 241509 0.7 0.65369
Target:  5'- uGCCGAaaucaCGCCGCCACCGuuGGCCa-- -3'
miRNA:   3'- gUGGCU-----GUGGUGGUGGCcgUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 184448 0.7 0.671553
Target:  5'- cCACgCGACcccgucgugaccuACCGCCGCCuGCAGCUGGa -3'
miRNA:   3'- -GUG-GCUG-------------UGGUGGUGGcCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 5917 0.7 0.672491
Target:  5'- aGCCGugAagACgCAUUGGCGGCCGAUa -3'
miRNA:   3'- gUGGCugUggUG-GUGGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 77741 0.7 0.672491
Target:  5'- uGCCguuucaGACGCCGCCGCCa-CGGCCGAa -3'
miRNA:   3'- gUGG------CUGUGGUGGUGGccGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 283269 0.7 0.672491
Target:  5'- -uCCGACACCcCCGCCucGGCAuCUGGCg -3'
miRNA:   3'- guGGCUGUGGuGGUGG--CCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 296984 0.7 0.681852
Target:  5'- cCGCCGACACCAUCGCgcgcguccuCGGUGG-CGAUg -3'
miRNA:   3'- -GUGGCUGUGGUGGUG---------GCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279626 0.7 0.690248
Target:  5'- uGCCGGCACCACCugCugcucguGGUAG-UGGCg -3'
miRNA:   3'- gUGGCUGUGGUGGugG-------CCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 96496 0.7 0.691179
Target:  5'- -cUCGGCACCaACCGCaCGGgGGCCG-Cg -3'
miRNA:   3'- guGGCUGUGG-UGGUG-GCCgUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 39238 0.7 0.700464
Target:  5'- aACCG-CGCUGgaACUGGCAGCCGAa -3'
miRNA:   3'- gUGGCuGUGGUggUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 226200 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.