Results 61 - 80 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 38504 | 0.68 | 0.763689 |
Target: 5'- -uCCGAUguGCCGCCACCGGU-GCCcucGAUa -3' miRNA: 3'- guGGCUG--UGGUGGUGGCCGuCGG---CUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 313611 | 0.68 | 0.763689 |
Target: 5'- gACaaACACCACCA-CGaCAGCCGACg -3' miRNA: 3'- gUGgcUGUGGUGGUgGCcGUCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 241048 | 0.68 | 0.763689 |
Target: 5'- aACUGAacUACCACCACCGuCAuCCGGCu -3' miRNA: 3'- gUGGCU--GUGGUGGUGGCcGUcGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 227214 | 0.68 | 0.763689 |
Target: 5'- aCAUCGGCGCa--CACCGGCAGguCgGACg -3' miRNA: 3'- -GUGGCUGUGgugGUGGCCGUC--GgCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224151 | 0.68 | 0.772382 |
Target: 5'- gCGCUGGCGCUGgCGCUGGCGG-UGGCg -3' miRNA: 3'- -GUGGCUGUGGUgGUGGCCGUCgGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 237074 | 0.68 | 0.772382 |
Target: 5'- uCGCCGACGuCCGCCuugauACaucugaGGguGUCGACg -3' miRNA: 3'- -GUGGCUGU-GGUGG-----UGg-----CCguCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 297717 | 0.68 | 0.772382 |
Target: 5'- uCACCGACA--ACCGCCGGggauggGGCCGGa -3' miRNA: 3'- -GUGGCUGUggUGGUGGCCg-----UCGGCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 256018 | 0.68 | 0.772382 |
Target: 5'- cCACCGuCAUCACCAcacggacuucccCCGGCGGCgaaGAa -3' miRNA: 3'- -GUGGCuGUGGUGGU------------GGCCGUCGg--CUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 208351 | 0.68 | 0.780969 |
Target: 5'- -cCCGACGCCAUC-CCGGaAGuCCGAg -3' miRNA: 3'- guGGCUGUGGUGGuGGCCgUC-GGCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 303806 | 0.68 | 0.781821 |
Target: 5'- uCGCCGGCAgCACCACCcgcaccaacgucaucGCGGCCa-- -3' miRNA: 3'- -GUGGCUGUgGUGGUGGc--------------CGUCGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 226446 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 226074 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 226632 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 96380 | 0.68 | 0.789442 |
Target: 5'- uGCCGGCGCCGCgGaugaaaGGUGuGCCGACc -3' miRNA: 3'- gUGGCUGUGGUGgUgg----CCGU-CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 315928 | 0.68 | 0.789442 |
Target: 5'- cCACCGcCAUCAUgACCGGaucCCGACa -3' miRNA: 3'- -GUGGCuGUGGUGgUGGCCgucGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 59406 | 0.68 | 0.789442 |
Target: 5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3' miRNA: 3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 159198 | 0.68 | 0.797795 |
Target: 5'- gGCCGcCGCCuCCgggcuuucgACCGGCGGCgaCGGCg -3' miRNA: 3'- gUGGCuGUGGuGG---------UGGCCGUCG--GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 10114 | 0.68 | 0.797795 |
Target: 5'- gACaCGGCACCcgauguGCCACCGGac-CCGGCu -3' miRNA: 3'- gUG-GCUGUGG------UGGUGGCCgucGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 297365 | 0.67 | 0.811698 |
Target: 5'- gCACagcgaGACAUCGCCACCGaggacgcgcgcgauGguGUCGGCg -3' miRNA: 3'- -GUGg----CUGUGGUGGUGGC--------------CguCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 313724 | 0.67 | 0.812504 |
Target: 5'- gCACUGAUACCAauuugauggcuauCCGCCaagcuaugauggcGGCGguGCCGACa -3' miRNA: 3'- -GUGGCUGUGGU-------------GGUGG-------------CCGU--CGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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