miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 225340 0.67 0.814111
Target:  5'- cCACCGccgcuguccccaACACCACCccccucuCCGGCuccAGCuCGACc -3'
miRNA:   3'- -GUGGC------------UGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 241452 0.67 0.814111
Target:  5'- gCACCGuCGCCAagaauuCCGCCaGCuuGUCGACg -3'
miRNA:   3'- -GUGGCuGUGGU------GGUGGcCGu-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 278881 0.67 0.814111
Target:  5'- uCGCUGACACC-CUucgaauacCCGGCAGCCc-- -3'
miRNA:   3'- -GUGGCUGUGGuGGu-------GGCCGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 109424 0.67 0.820484
Target:  5'- gCGCCGAacuuguacgaCGCCAUCGGCGucagcGCCGAUg -3'
miRNA:   3'- -GUGGCUgug-------GUGGUGGCCGU-----CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 90665 0.67 0.821274
Target:  5'- uGuuGACACCacucgcgacgucgACCACuuugcaCGGCAGCCGGu -3'
miRNA:   3'- gUggCUGUGG-------------UGGUG------GCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 141767 0.67 0.822063
Target:  5'- gACuCGGCgAUCGCCGCCGGCAaCCuuGGCa -3'
miRNA:   3'- gUG-GCUG-UGGUGGUGGCCGUcGG--CUG- -5'
10385 5' -60.6 NC_002687.1 + 307250 0.67 0.822063
Target:  5'- -uCCGGCcuCCACCACCaGCAccGCCGcCg -3'
miRNA:   3'- guGGCUGu-GGUGGUGGcCGU--CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 279284 0.67 0.829867
Target:  5'- uGCCGGCACCACCGgCCcaccagaagaGuCAGCgGACc -3'
miRNA:   3'- gUGGCUGUGGUGGU-GG----------CcGUCGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 300247 0.67 0.829867
Target:  5'- cCGCCGACuuCCGCCACUugGGCucGGgUGGCu -3'
miRNA:   3'- -GUGGCUGu-GGUGGUGG--CCG--UCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 103091 0.67 0.829867
Target:  5'- -gUCGACGCCGggaaCAacgCGGguGCCGACg -3'
miRNA:   3'- guGGCUGUGGUg---GUg--GCCguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 161233 0.67 0.829867
Target:  5'- uCACCGugGCCGaaGCCGaGUAGUCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUggUGGC-CGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 279528 0.67 0.829867
Target:  5'- -uCCGGCACCGCCGCUGcGCAcGCg--- -3'
miRNA:   3'- guGGCUGUGGUGGUGGC-CGU-CGgcug -5'
10385 5' -60.6 NC_002687.1 + 3229 0.67 0.837518
Target:  5'- uGCCGACGaaggCGCCAUCGGCGcccucgagaccGCCG-Ca -3'
miRNA:   3'- gUGGCUGUg---GUGGUGGCCGU-----------CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 89956 0.67 0.837518
Target:  5'- uCAUCGuCAUCucuGCCGCUGGCggAGUCGGCa -3'
miRNA:   3'- -GUGGCuGUGG---UGGUGGCCG--UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 72541 0.67 0.845011
Target:  5'- gCACUGGCACUGCuCGgCGGUGuGUCGGCg -3'
miRNA:   3'- -GUGGCUGUGGUG-GUgGCCGU-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 101593 0.67 0.845011
Target:  5'- cCACCGugAgCGCCgaagACCGcgccaaguacGCGGCCGAa -3'
miRNA:   3'- -GUGGCugUgGUGG----UGGC----------CGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 70341 0.67 0.845011
Target:  5'- gACCGccagaGCCGCCAgCGGCAuGUaCGACa -3'
miRNA:   3'- gUGGCug---UGGUGGUgGCCGU-CG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 57233 0.67 0.845011
Target:  5'- aACCGGCGCCGCgggcaUACaCGcGCAGgCGAUg -3'
miRNA:   3'- gUGGCUGUGGUG-----GUG-GC-CGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 282306 0.67 0.85234
Target:  5'- -cCCGGCACCGCC-CCuGCuccuGCCG-Cg -3'
miRNA:   3'- guGGCUGUGGUGGuGGcCGu---CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 97634 0.67 0.85234
Target:  5'- uGCCGGCACCGug-UCGGCGGugacaCCGACg -3'
miRNA:   3'- gUGGCUGUGGUgguGGCCGUC-----GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.