miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 3229 0.67 0.837518
Target:  5'- uGCCGACGaaggCGCCAUCGGCGcccucgagaccGCCG-Ca -3'
miRNA:   3'- gUGGCUGUg---GUGGUGGCCGU-----------CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 3631 0.71 0.625396
Target:  5'- aCACCGcacuACACUucGCCAUCGGUGGUCGAa -3'
miRNA:   3'- -GUGGC----UGUGG--UGGUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 5917 0.7 0.672491
Target:  5'- aGCCGugAagACgCAUUGGCGGCCGAUa -3'
miRNA:   3'- gUGGCugUggUG-GUGGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 7235 0.69 0.746013
Target:  5'- uCGCUGGugUCACCACUGGCA-CCGGCu -3'
miRNA:   3'- -GUGGCUguGGUGGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 10114 0.68 0.797795
Target:  5'- gACaCGGCACCcgauguGCCACCGGac-CCGGCu -3'
miRNA:   3'- gUG-GCUGUGG------UGGUGGCCgucGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 13319 0.66 0.89804
Target:  5'- uGCCGGCGCUGCUgugAUCGGCuGCgcuccugCGACg -3'
miRNA:   3'- gUGGCUGUGGUGG---UGGCCGuCG-------GCUG- -5'
10385 5' -60.6 NC_002687.1 + 21111 0.75 0.411716
Target:  5'- aGuuGACAUCGgCACCGGCAGCCa-- -3'
miRNA:   3'- gUggCUGUGGUgGUGGCCGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 23714 0.79 0.233132
Target:  5'- cCGCCGACGCC-CCuCCGGCAucGCUGGCg -3'
miRNA:   3'- -GUGGCUGUGGuGGuGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 25201 0.78 0.289774
Target:  5'- gACCGACgcguuggACCACaaaacuCGCCGGCAGCCGAa -3'
miRNA:   3'- gUGGCUG-------UGGUG------GUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 28986 0.69 0.746013
Target:  5'- --aUGACACCgGCCGCCGaGCAccuGCCGAg -3'
miRNA:   3'- gugGCUGUGG-UGGUGGC-CGU---CGGCUg -5'
10385 5' -60.6 NC_002687.1 + 37538 0.66 0.859498
Target:  5'- gUACCGGCaACCuccCCACCcGUacucagcgaaccAGCCGACa -3'
miRNA:   3'- -GUGGCUG-UGGu--GGUGGcCG------------UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 38504 0.68 0.763689
Target:  5'- -uCCGAUguGCCGCCACCGGU-GCCcucGAUa -3'
miRNA:   3'- guGGCUG--UGGUGGUGGCCGuCGG---CUG- -5'
10385 5' -60.6 NC_002687.1 + 39059 0.69 0.746013
Target:  5'- cCAUCGAUGCUACCACgGGUgacguAGCCGu- -3'
miRNA:   3'- -GUGGCUGUGGUGGUGgCCG-----UCGGCug -5'
10385 5' -60.6 NC_002687.1 + 39238 0.7 0.700464
Target:  5'- aACCG-CGCUGgaACUGGCAGCCGAa -3'
miRNA:   3'- gUGGCuGUGGUggUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 40077 0.66 0.898636
Target:  5'- uGCUGAUGCguuGgCACCGGCuucgagaaggguAGCCGACa -3'
miRNA:   3'- gUGGCUGUGg--UgGUGGCCG------------UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 41688 0.69 0.746013
Target:  5'- aCAUCGACACgGCUugCGGCucgcgcuucuCCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGuc--------GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 41871 0.66 0.886343
Target:  5'- aCAUCGACACgGCUugCGGCu-CgGGCu -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGucGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 47772 0.74 0.444489
Target:  5'- gGCCGGCACaccugCGCCACCGGaggcugucccccCAGUCGGCa -3'
miRNA:   3'- gUGGCUGUG-----GUGGUGGCC------------GUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 57233 0.67 0.845011
Target:  5'- aACCGGCGCCGCgggcaUACaCGcGCAGgCGAUg -3'
miRNA:   3'- gUGGCUGUGGUG-----GUG-GC-CGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 59406 0.68 0.789442
Target:  5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3'
miRNA:   3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.