miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 101593 0.67 0.845011
Target:  5'- cCACCGugAgCGCCgaagACCGcgccaaguacGCGGCCGAa -3'
miRNA:   3'- -GUGGCugUgGUGG----UGGC----------CGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 103005 0.69 0.737944
Target:  5'- gCGCCGACACCaagGCCGCCaaggccacgaaggcuGCAGCCa-- -3'
miRNA:   3'- -GUGGCUGUGG---UGGUGGc--------------CGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 103091 0.67 0.829867
Target:  5'- -gUCGACGCCGggaaCAacgCGGguGCCGACg -3'
miRNA:   3'- guGGCUGUGGUg---GUg--GCCguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 106638 0.72 0.569081
Target:  5'- gCACCGACACCAuguCCACUcGCgGGUCGAUg -3'
miRNA:   3'- -GUGGCUGUGGU---GGUGGcCG-UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 109424 0.67 0.820484
Target:  5'- gCGCCGAacuuguacgaCGCCAUCGGCGucagcGCCGAUg -3'
miRNA:   3'- -GUGGCUgug-------GUGGUGGCCGU-----CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 122680 0.66 0.879909
Target:  5'- cCGCCGugACUuCgACCGGUAGa-GACa -3'
miRNA:   3'- -GUGGCugUGGuGgUGGCCGUCggCUG- -5'
10385 5' -60.6 NC_002687.1 + 125502 0.66 0.879909
Target:  5'- uCAUCGACACgGacuCCGCCGGCucuuGCCc-- -3'
miRNA:   3'- -GUGGCUGUGgU---GGUGGCCGu---CGGcug -5'
10385 5' -60.6 NC_002687.1 + 130366 0.71 0.644265
Target:  5'- cCACCGccacCACCACCACCGcCAGCU-ACa -3'
miRNA:   3'- -GUGGCu---GUGGUGGUGGCcGUCGGcUG- -5'
10385 5' -60.6 NC_002687.1 + 131498 0.69 0.713379
Target:  5'- gGCCGAUGgCGuuACCGGCGugguggaauauagcuGCCGACa -3'
miRNA:   3'- gUGGCUGUgGUggUGGCCGU---------------CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 141767 0.67 0.822063
Target:  5'- gACuCGGCgAUCGCCGCCGGCAaCCuuGGCa -3'
miRNA:   3'- gUG-GCUG-UGGUGGUGGCCGUcGG--CUG- -5'
10385 5' -60.6 NC_002687.1 + 145724 0.67 0.85234
Target:  5'- cCACCugggGAgACUACUgggcGCUGGCcGCCGACa -3'
miRNA:   3'- -GUGG----CUgUGGUGG----UGGCCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 158825 0.72 0.563505
Target:  5'- cCGCCGuCGCCGCCggucgaaagcccggaGgCGGCGGCCGuCg -3'
miRNA:   3'- -GUGGCuGUGGUGG---------------UgGCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 159198 0.68 0.797795
Target:  5'- gGCCGcCGCCuCCgggcuuucgACCGGCGGCgaCGGCg -3'
miRNA:   3'- gUGGCuGUGGuGG---------UGGCCGUCG--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 159948 0.7 0.65369
Target:  5'- aGCCGGgGCgGCCAa-GGCAGCCGcCg -3'
miRNA:   3'- gUGGCUgUGgUGGUggCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 161233 0.67 0.829867
Target:  5'- uCACCGugGCCGaaGCCGaGUAGUCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUggUGGC-CGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 164292 0.84 0.115708
Target:  5'- gCAUCGGCACCGgCACCGGCAuGUCGACa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGU-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 165581 0.66 0.873288
Target:  5'- -gUCGACACCgaggucugggACCAUCGGCaggggGGCCGuACc -3'
miRNA:   3'- guGGCUGUGG----------UGGUGGCCG-----UCGGC-UG- -5'
10385 5' -60.6 NC_002687.1 + 169780 0.66 0.866483
Target:  5'- --aCGAUGCCGCCagguccACCGuGUcguGGCCGACg -3'
miRNA:   3'- gugGCUGUGGUGG------UGGC-CG---UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 174734 0.67 0.85234
Target:  5'- cCGCCGGaacCGCCggaACCGCCGGaaccGCCGGa -3'
miRNA:   3'- -GUGGCU---GUGG---UGGUGGCCgu--CGGCUg -5'
10385 5' -60.6 NC_002687.1 + 184448 0.7 0.671553
Target:  5'- cCACgCGACcccgucgugaccuACCGCCGCCuGCAGCUGGa -3'
miRNA:   3'- -GUG-GCUG-------------UGGUGGUGGcCGUCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.